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samtools-1.9-3.el8 RPM for s390x

From EPEL 8 for s390x / Packages / s

Name: samtools Distribution: Fedora Project
Version: 1.9 Vendor: Fedora Project
Release: 3.el8 Build date: Tue May 5 22:24:22 2020
Group: Unspecified Build host: buildvm-s390x-21.s390.fedoraproject.org
Size: 1136097 Source RPM: samtools-1.9-3.el8.src.rpm
Packager: Fedora Project
Url: http://www.htslib.org/
Summary: Tools for nucleotide sequence alignments in the SAM format
 
SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.

Provides

Requires

License

MIT

Changelog

* Tue Mar 17 2020 Jun Aruga <[email protected]> - 1.9-3
  - Fix the build failure adding perl(FindBin) and perl(lib) build dependencies.
* Thu Jan 30 2020 Fedora Release Engineering <[email protected]> - 1.9-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Mon Nov 04 2019 Jun Aruga <[email protected]> - 1.9-1
  - Update to 1.9
  - Remove devel and libs sub packges, as "make dylib" was removed.
* Fri Nov 01 2019 Jun Aruga <[email protected]> - 0.1.19-20
  - Remove Python 2 dependency (rhbz#1738176).
* Fri Jul 26 2019 Fedora Release Engineering <[email protected]> - 0.1.19-19
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Wed Jul 10 2019 Petr Pisar <[email protected]> - 0.1.19-18
  - varfilter.py is a Python 2 code (bug #1675976)
* Sat Feb 02 2019 Fedora Release Engineering <[email protected]> - 0.1.19-17
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
* Wed Jul 25 2018 Adam Huffman <[email protected]> - 0.1.19-16
  - Add BR for python2
* Fri Jul 20 2018 Adam Huffman <[email protected]> - 0.1.19-15
  - Add BR for gcc
* Sat Jul 14 2018 Fedora Release Engineering <[email protected]> - 0.1.19-14
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
* Fri Feb 09 2018 Fedora Release Engineering <[email protected]> - 0.1.19-13
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
* Thu Aug 03 2017 Fedora Release Engineering <[email protected]> - 0.1.19-12
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Thu Jul 27 2017 Fedora Release Engineering <[email protected]> - 0.1.19-11
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Sat Feb 11 2017 Fedora Release Engineering <[email protected]> - 0.1.19-10
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
* Thu Feb 04 2016 Fedora Release Engineering <[email protected]> - 0.1.19-9
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Fri Jun 19 2015 Fedora Release Engineering <[email protected]> - 0.1.19-8
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Fri May 29 2015 Tom Callaway <[email protected]> - 0.1.19-7
  - add fixes from Rsamtools
* Mon Aug 18 2014 Fedora Release Engineering <[email protected]> - 0.1.19-6
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Mon Jun 09 2014 Tom Callaway <[email protected]> - 0.1.19-5
  - add faidx_fetch_seq2 function from rsamtools
* Sun Jun 08 2014 Fedora Release Engineering <[email protected]> - 0.1.19-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Sun Aug 04 2013 Fedora Release Engineering <[email protected]> - 0.1.19-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Wed Jul 17 2013 Petr Pisar <[email protected]> - 0.1.19-2
  - Perl 5.18 rebuild
* Thu Apr 11 2013 Tom Callaway <[email protected]> - 0.1.19-1
  - update to 0.1.19
* Thu Feb 14 2013 Fedora Release Engineering <[email protected]> - 0.1.18-5
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Sat Jul 21 2012 Fedora Release Engineering <[email protected]> - 0.1.18-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Sat Jan 14 2012 Fedora Release Engineering <[email protected]> - 0.1.18-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Wed Oct 26 2011 Adam Huffman <[email protected]> - 0.1.18-2
  - make sure new seqtk tool included
* Tue Sep 06 2011 Rasmus Ory Nielsen <[email protected]> - 0.1.18-1
  - Updated to 0.1.18
* Tue May 10 2011 Rasmus Ory Nielsen <[email protected]> - 0.1.16-1
  - Updated to 0.1.16
* Mon Apr 11 2011 Rasmus Ory Nielsen <[email protected]> - 0.1.15-1
  - Updated to 0.1.15
* Wed Mar 23 2011 Rasmus Ory Nielsen <[email protected]> - 0.1.14-1
  - Updated to 0.1.14
  - Build shared library instead of static
* Wed Feb 09 2011 Fedora Release Engineering <[email protected]> - 0.1.12a-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Mon Dec 06 2010 Rasmus Ory Nielsen <[email protected]> - 0.1.12a-2
  - Fixed header files directory ownership
  - Added missing header files
* Mon Dec 06 2010 Rasmus Ory Nielsen <[email protected]> - 0.1.12a-1
  - Updated to 0.1.12a
* Tue Nov 23 2010 Adam Huffman <[email protected]> - 0.1.8-4
  - cleanup man page handling
* Sun Oct 10 2010 Adam Huffman <[email protected]> - 0.1.8-4
  - fix attributes for devel subpackage
  - fix library location
* Sun Sep 26 2010 Adam Huffman <[email protected]> - 0.1.8-3
  - put headers and library in standard locations
* Mon Sep 06 2010 Adam Huffman <[email protected]> - 0.1.8-2
  - merge Rasmus' latest changes (0.1.8 update)
  - include bam.h and libbam.a for Bio-SamTools compilation
  - move bam.h and libbam.a to single directory
  - put bgzf.h, khash.h and faidx.h in the same place
  - add -fPIC to CFLAGS to make Bio-SamTools happy
  - add virtual Provide as per guidelines
* Tue Aug 17 2010 Rasmus Ory Nielsen <[email protected]> - 0.1.8-1
  - Updated to 0.1.8.
* Mon Nov 30 2009 Rasmus Ory Nielsen <[email protected]> - 0.1.7a-1
  - Updated to 0.1.7a.
* Sun Jul 26 2009 Fedora Release Engineering <[email protected]> - 0.1.5c-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Sun Jul 12 2009 Rasmus Ory Nielsen <[email protected]> - 0.1.5c-3
  - Specfile cleanup.
* Sat Jul 11 2009 Rasmus Ory Nielsen <[email protected]> - 0.1.5c-2
  - Fixed manpage location.
  - Make sure optflags is passed to the makefiles.
* Sat Jul 11 2009 Rasmus Ory Nielsen <[email protected]> - 0.1.5c-1
  - Initial build.

Files

/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/lib/.build-id
/usr/lib/.build-id/3e
/usr/lib/.build-id/3e/f4f21302348428c43fe5d996d566655bdbf1e7
/usr/lib/.build-id/54
/usr/lib/.build-id/54/344ec3ae7e53f7bdd38ef8ac1976d6a5f745e2
/usr/lib/.build-id/84
/usr/lib/.build-id/84/5af903fb458ca0567cd1b0f33793efb478a007
/usr/lib/.build-id/93
/usr/lib/.build-id/93/5d9825624d9139fbd14409a515806cd87eb126
/usr/lib/.build-id/a4
/usr/lib/.build-id/a4/65b76d6ec180616f9f7c91ee7f4daf2a156d21
/usr/lib/.build-id/d7
/usr/lib/.build-id/d7/3a412036d176893fe18cac4fc58022a4bdd0d4
/usr/lib/.build-id/fe
/usr/lib/.build-id/fe/5050451f14f1758d479609378e2cd78ce6c111
/usr/share/doc/samtools
/usr/share/doc/samtools/AUTHORS
/usr/share/doc/samtools/ChangeLog.old
/usr/share/doc/samtools/NEWS
/usr/share/doc/samtools/examples
/usr/share/doc/samtools/examples/00README.txt
/usr/share/doc/samtools/examples/ex1.fa
/usr/share/doc/samtools/examples/ex1.sam.gz
/usr/share/doc/samtools/examples/toy.fa
/usr/share/doc/samtools/examples/toy.sam
/usr/share/licenses/samtools
/usr/share/licenses/samtools/LICENSE
/usr/share/man/man1/samtools.1.gz
/usr/share/man/man1/wgsim.1.gz

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Fabrice Bellet, Wed Dec 11 04:55:28 2024