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| Name: R-ape | Distribution: Fedora Project |
| Version: 5.7.1 | Vendor: Fedora Project |
| Release: 7.fc41 | Build date: Wed Jul 17 17:36:55 2024 |
| Group: Unspecified | Build host: buildvm-ppc64le-11.iad2.fedoraproject.org |
| Size: 4698205 | Source RPM: R-ape-5.7.1-7.fc41.src.rpm |
| Packager: Fedora Project | |
| Url: https://CRAN.R-project.org/package=ape | |
| Summary: Analyses of Phylogenetics and Evolution | |
Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
GPL-2.0-only OR GPL-3.0-only
* Wed Jul 17 2024 Fedora Release Engineering <[email protected]> - 5.7.1-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Thu Apr 25 2024 Iñaki Úcar <[email protected]> - 5.7.1-6 - R-maint-sig mass rebuild * Mon Jan 22 2024 Fedora Release Engineering <[email protected]> - 5.7.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering <[email protected]> - 5.7.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering <[email protected]> - 5.7.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar <[email protected]> - 5.7.1-2 - R-maint-sig mass rebuild * Mon Mar 13 2023 Tom Callaway <[email protected]> - 5.7.1-1 - update to 5.7-1 * Sun Jan 22 2023 Elliott Sales de Andrade <[email protected]> - 5.6.2-3 - Drop support for i686 - Switch to SPDX licenses * Wed Jan 18 2023 Fedora Release Engineering <[email protected]> - 5.6.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Sep 02 2022 Tom Callaway <[email protected]> - 5.6.2-1 - update to 5.6-2 - rebuild for R 4.2.1 - bootstrap on * Wed Jul 20 2022 Fedora Release Engineering <[email protected]> - 5.5-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
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