openms-3.2.0-3.fc42 RPM for x86_64

From Fedora Rawhide for x86_64 / o

OpenMS is a C++ library for LC-MS data management and analyses.
It offers an infrastructure for the rapid development of mass spectrometry
related software. OpenMS is free software available under the three clause BSD
license and runs under Windows, MacOSX and Linux.

It comes with a vast variety of pre-built and ready-to-use tools for proteomics
and metabolomics data analysis (TOPPTools) and
powerful 2D and 3D visualization(TOPPView).

OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH, etc.

It provides built-in algorithms for de-novo identification and database search,
as well as adapters to other state-of-the art tools like Mascot, OMSSA, etc.
It supports easy integration of OpenMS built tools into workflow engines like
Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and
a unified parameter handling via a 'common tool description' (CTD) scheme.

The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.

The TOPP tools are divided into several subgroups:

 - Graphical Tools
 - File Handling
 - Signal Processing and Preprocessing
 - Quantitation
 - Map Alignment
 - Protein/Peptide Identification
 - Protein/Peptide Processing
 - Targeted Experiments
 - Peptide Property Prediction
 - Misc

Provides

• openms
• application()
• application(TOPPAS.desktop)
• application(TOPPView.desktop)
• application(inifileeditor.desktop)
• libQt5QuickWidgets.so.5()(64bit)
• libQt5QuickWidgets.so.5(Qt_5)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.0)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.1)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.10)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.11)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.12)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.13)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.14)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.15)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.2)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.3)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.4)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.5)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.6)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.7)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.8)(64bit)
• libQt5QuickWidgets.so.5(Qt_5.9)(64bit)
• libQt5QuickWidgets.so.5(Qt_5_PRIVATE_API)(64bit)
• metainfo()
• metainfo(TOPPAS.appdata.xml)
• metainfo(TOPPView.appdata.xml)
• openms(x86-64)

Requires

• R-core(x86-64)
• libCbc.so.3()(64bit)
• libCgl.so.1()(64bit)
• libCoinUtils.so.3()(64bit)
• libOsiClp.so.1()(64bit)
• libQt5Core.so.5()(64bit)
• libQt5Core.so.5(Qt_5)(64bit)
• libQt5Core.so.5(Qt_5.15)(64bit)
• libQt5Gui.so.5()(64bit)
• libQt5Gui.so.5(Qt_5)(64bit)
• libQt5Gui.so.5(Qt_5_PRIVATE_API)(64bit)
• libQt5Network.so.5()(64bit)
• libQt5Network.so.5(Qt_5)(64bit)
• libQt5Qml.so.5()(64bit)
• libQt5Qml.so.5(Qt_5)(64bit)
• libQt5Qml.so.5(Qt_5_PRIVATE_API)(64bit)
• libQt5Quick.so.5()(64bit)
• libQt5Quick.so.5(Qt_5)(64bit)
• libQt5Quick.so.5(Qt_5_PRIVATE_API)(64bit)
• libQt5Svg.so.5()(64bit)
• libQt5Svg.so.5(Qt_5)(64bit)
• libQt5WebChannel.so.5()(64bit)
• libQt5WebChannel.so.5(Qt_5)(64bit)
• libQt5WebEngineWidgets.so.5()(64bit)
• libQt5WebEngineWidgets.so.5(Qt_5)(64bit)
• libQt5Widgets.so.5()(64bit)
• libQt5Widgets.so.5(Qt_5)(64bit)
• libQt5Widgets.so.5(Qt_5_PRIVATE_API)(64bit)
• libbz2.so.1()(64bit)
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.28)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.32)(64bit)
• libc.so.6(GLIBC_2.33)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_ABI_DT_RELR)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libgomp.so.1()(64bit)
• libgomp.so.1(GOMP_1.0)(64bit)
• libgomp.so.1(GOMP_4.0)(64bit)
• libgomp.so.1(GOMP_4.5)(64bit)
• libgomp.so.1(OMP_1.0)(64bit)
• libgomp.so.1(OMP_3.0)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.2.5)(64bit)
• libm.so.6(GLIBC_2.23)(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libm.so.6(GLIBC_2.38)(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.11)(64bit)
• libstdc++.so.6(CXXABI_1.3.13)(64bit)
• libstdc++.so.6(CXXABI_1.3.15)(64bit)
• libstdc++.so.6(CXXABI_1.3.2)(64bit)
• libstdc++.so.6(CXXABI_1.3.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.7)(64bit)
• libstdc++.so.6(CXXABI_1.3.8)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.14)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.19)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.22)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.26)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• libsvm.so.4()(64bit)
• libxerces-c-3.3.so()(64bit)
• libyaml-cpp.so.0.8()(64bit)
• libz.so.1()(64bit)
• openms-data(x86-64) = 1:3.2.0-3.fc42
• percolator(x86-64)
• qt5-qtdeclarative-devel(x86-64)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

BSD-3-Clause AND Apache-2.0 AND CC-BY-4.0 AND CC0-1.0

Changelog

* Sat Jan 04 2025 Antonio Trande <[email protected]> - 1:3.2.0-3
  - Install README file of TDL
* Sat Jan 04 2025 Antonio Trande <[email protected]> - 1:3.2.0-2
  - Include TDL files
* Fri Jan 03 2025 Antonio Trande <[email protected]> - 1:3.2.0-1
  - Release 3.2.0
* Fri Oct 25 2024 Orion Poplawski <[email protected]> - 1:3.1.0-0.16.pre1
  - Rebuild for hdf5 1.14.5
* Fri Oct 18 2024 Pete Walter <[email protected]> - 1:3.1.0-0.15.pre1
  - Rebuild for xerces-c 3.3
* Tue Sep 03 2024 Jerry James <[email protected]> - 1:3.1.0-0.14.pre1
  - Rebuild for libsvm 3.35
* Mon Sep 02 2024 Miroslav Suchý <[email protected]> - 1:3.1.0-0.13.pre1
  - convert license to SPDX
* Thu Jul 18 2024 Fedora Release Engineering <[email protected]> - 1:3.1.0-0.12.pre1
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
* Sat Jun 08 2024 Python Maint <[email protected]> - 1:3.1.0-0.11.pre1
  - Rebuilt for Python 3.13
* Sat Feb 24 2024 Jerry James <[email protected]> - 1:3.1.0-0.10.pre1
  - Rebuild for updated coin-or-* packages
* Sun Feb 11 2024 Antonio Trande <[email protected]> - 1:3.1.0-0.9.pre1
  - Set Exclusive architectures
* Sun Feb 11 2024 Antonio Trande <[email protected]> - 1:3.1.0-0.8.pre1
  - Exclude ix86 architectures
* Thu Jan 25 2024 Fedora Release Engineering <[email protected]> - 1:3.1.0-0.7.pre1
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Sun Jan 21 2024 Fedora Release Engineering <[email protected]> - 1:3.1.0-0.6.pre1
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Mon Dec 18 2023 Tulio Magno Quites Machado Filho <[email protected]> - 1:3.1.0-0.5.pre1
  - Remove tests that fail with zlib-ng-compat
* Sun Nov 05 2023 Antonio Trande <[email protected]> - 1:3.1.0-0.4.pre1
  - Exclude failed test in aarch64
* Sun Oct 29 2023 Antonio Trande <[email protected]> - 1:3.1.0-0.3.pre1
  - Add missing binary file
* Sun Oct 29 2023 Antonio Trande <[email protected]> - 1:3.1.0-0.2.pre1
  - Fix installed files
* Sat Oct 28 2023 Antonio Trande <[email protected]> - 1:3.1.0-0.1.pre1
  - Pre-release 3.1.0
* Mon Aug 14 2023 Antonio Trande <[email protected]> - 3.0.0-15
  - Fix unintentional change
* Mon Aug 14 2023 Antonio Trande <[email protected]> - 3.0.0-14
  - Add runtime dependency (RHBZ#2231587)
* Mon Aug 14 2023 Antonio Trande <[email protected]> - 3.0.0-13
  - Unbundle Qt5QuickWidgets libraries (RHBZ#2231587)
* Sun Jul 30 2023 Antonio Trande <[email protected]> - 3.0.0-12
  - Exclude TOPP_OpenSwathWorkflow* tests
* Sun Jul 30 2023 Antonio Trande <[email protected]> - 3.0.0-11
  - Exclude TOPP_OpenSwathWorkflow_14_out1 test
* Sat Jul 29 2023 Antonio Trande <[email protected]> - 3.0.0-10
  - Remove Exit 1
* Mon Jul 24 2023 Antonio Trande <[email protected]> - 3.0.0-9
  - Disable LTO flags
* Sun Jul 23 2023 Antonio Trande <[email protected]> - 3.0.0-8
  - Set _smp_ncpus_max equal to 2 for all architectures
* Sat Jul 22 2023 Antonio Trande <[email protected]> - 3.0.0-7
  - Use one job to build pyopenms
* Fri Jul 21 2023 Antonio Trande <[email protected]> - 3.0.0-6
  - Release 3.0.0
* Thu Jul 20 2023 Fedora Release Engineering <[email protected]> - 3.0.0-5
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Mon Jul 03 2023 Antonio Trande <[email protected]> - 3.0.0-4
  - Add new tool and CMake config files
* Sun Jul 02 2023 Antonio Trande <[email protected]> - 3.0.0-3
  - Fix macro
* Sun Jul 02 2023 Antonio Trande <[email protected]> - 3.0.0-2
  - Exclude failed tests
* Sun Jul 02 2023 Antonio Trande <[email protected]> - 3.0.0-1
  - Pre-release 3.0.0
* Wed Feb 01 2023 Antonio Trande <[email protected]> - 2.8.0-7
  - Fixed for GCC-13
* Thu Jan 19 2023 Fedora Release Engineering <[email protected]> - 2.8.0-6
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild

Files

/usr/bin/AssayGeneratorMetaboSirius
/usr/bin/BaselineFilter
/usr/bin/ConsensusID
/usr/bin/ConsensusMapNormalizer
/usr/bin/DTAExtractor
/usr/bin/DatabaseFilter
/usr/bin/DatabaseSuitability
/usr/bin/Decharger
/usr/bin/EICExtractor
/usr/bin/ExecutePipeline
/usr/bin/FalseDiscoveryRate
/usr/bin/FeatureFinderCentroided
/usr/bin/FeatureFinderIdentification
/usr/bin/FeatureFinderMetabo
/usr/bin/FeatureFinderMultiplex
/usr/bin/FeatureLinkerLabeled
/usr/bin/FeatureLinkerUnlabeled
/usr/bin/FeatureLinkerUnlabeledKD
/usr/bin/FeatureLinkerUnlabeledQT
/usr/bin/FileConverter
/usr/bin/FileInfo
/usr/bin/FileMerger
/usr/bin/GenericWrapper
/usr/bin/HighResPrecursorMassCorrector
/usr/bin/IDConflictResolver
/usr/bin/IDFileConverter
/usr/bin/IDFilter
/usr/bin/IDMapper
/usr/bin/IDMerger
/usr/bin/IDPosteriorErrorProbability
/usr/bin/IDRTCalibration
/usr/bin/IDRipper
/usr/bin/IDScoreSwitcher
/usr/bin/INIFileEditor
/usr/bin/InternalCalibration
/usr/bin/IonMobilityBinning
/usr/bin/IsobaricAnalyzer
/usr/bin/LuciphorAdapter
/usr/bin/MRMMapper
/usr/bin/MRMTransitionGroupPicker
/usr/bin/MSGFPlusAdapter
/usr/bin/MapAlignerIdentification
/usr/bin/MapAlignerPoseClustering
/usr/bin/MapNormalizer
/usr/bin/MapRTTransformer
/usr/bin/MapStatistics
/usr/bin/MascotAdapter
/usr/bin/MascotAdapterOnline
/usr/bin/MassTraceExtractor
/usr/bin/MetaProSIP
/usr/bin/MetaboliteSpectralMatcher
/usr/bin/MzMLSplitter
/usr/bin/MzTabExporter
/usr/bin/NoiseFilterGaussian
/usr/bin/NoiseFilterSGolay
/usr/bin/OpenSwathAnalyzer
/usr/bin/OpenSwathAssayGenerator
/usr/bin/OpenSwathChromatogramExtractor
/usr/bin/OpenSwathConfidenceScoring
/usr/bin/OpenSwathDecoyGenerator
/usr/bin/OpenSwathFeatureXMLToTSV
/usr/bin/OpenSwathRTNormalizer
/usr/bin/OpenSwathWorkflow
/usr/bin/PeakPickerHiRes
/usr/bin/PeakPickerIterative
/usr/bin/PeptideIndexer
/usr/bin/PercolatorAdapter
/usr/bin/ProteinInference
/usr/bin/ProteinQuantifier
/usr/bin/Resampler
/usr/bin/SageAdapter
/usr/bin/SeedListGenerator
/usr/bin/SimpleSearchEngine
/usr/bin/SiriusExport
/usr/bin/SpecLibSearcher
/usr/bin/SpectraFilterNLargest
/usr/bin/SpectraFilterNormalizer
/usr/bin/SpectraFilterThresholdMower
/usr/bin/SpectraFilterWindowMower
/usr/bin/SpectraMerger
/usr/bin/StaticModification
/usr/bin/SwathWizard
/usr/bin/TOPPAS
/usr/bin/TOPPView
/usr/bin/TextExporter
/usr/bin/XTandemAdapter
/usr/lib/.build-id
/usr/lib/.build-id/03
/usr/lib/.build-id/03/2c36d72d958cad7fb59cf735536b4b6e3d815f
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Fabrice Bellet, Sat Jan 18 23:33:30 2025