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| Name: libnetcdf18-openmpi2 | Distribution: SUSE Linux Enterprise 15 |
| Version: 4.7.4 | Vendor: SUSE LLC <https://www.suse.com/> |
| Release: 150400.7.1 | Build date: Thu May 12 13:20:43 2022 |
| Group: Productivity/Scientific/Other | Build host: sheep73 |
| Size: 1324839 | Source RPM: netcdf-openmpi2-4.7.4-150400.7.1.src.rpm |
| Packager: https://www.suse.com/ | |
| Url: https://www.unidata.ucar.edu/software/netcdf/ | |
| Summary: Shared libraries for the NetCDF scientific data format | |
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a collection of software libraries
for C, Fortran, C++, and Perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
This package contains the openmpi2 version of the NetCDF runtime libraries.
NetCDF
* Mon Oct 25 2021 [email protected]
- Fix:
* CVE-2019-20007 https://sourceforge.net/p/ezxml/bugs/13
* CVE-2019-20006 https://sourceforge.net/p/ezxml/bugs/15
* CVE-2019-20201 https://sourceforge.net/p/ezxml/bugs/16
* CVE-2019-20202 https://sourceforge.net/p/ezxml/bugs/17
* CVE-2019-20199 https://sourceforge.net/p/ezxml/bugs/18
* CVE-2019-20200 https://sourceforge.net/p/ezxml/bugs/19
* CVE-2019-20198 https://sourceforge.net/p/ezxml/bugs/20
* CVE-2021-26221 https://sourceforge.net/p/ezxml/bugs/21
* CVE-2021-26222 https://sourceforge.net/p/ezxml/bugs/22
* CVE-2021-30485 https://sourceforge.net/p/ezxml/bugs/25
* CVE-2021-31229 https://sourceforge.net/p/ezxml/bugs/26
* CVE-2021-31347 &
* CVE-2021-31348 https://sourceforge.net/p/ezxml/bugs/27
* CVE-2021-31598 https://sourceforge.net/p/ezxml/bugs/28
(bsc#1191856)
Note:
* CVE-2021-26220 https://sourceforge.net/p/ezxml/bugs/23
not relevant for netcdf: code isn't used.
* CVE-2019-20005 https://sourceforge.net/p/ezxml/bugs/14
Issue cannot be reproduced and no patch is available upstream.
Added:
* Fix-CVE-2021-30485-bug-25.patch
* Fix-CVE-2021-31229-bug-26-CVE-2019-20201-bug-16-CVE-2019-20198-bug-20.patch
* Fix-CVE-2021-31347-bug-27.patch
* Fix-for-CVE-2019-20006-CVE-2019-20202-CVE-2021-31598-ezxml-bug-15-17-28.patch
* Fix-for-CVE-2019-20007-ezxml-bug-13.patch
* Fix-for-CVE-2019-20199-ezxml-bug-18.patch
* Fix-for-CVE-2019-20200-ezxml-bug-19.patch
* Fix-for-CVE-2021-26221-ezxml-bug-21.patch
* Fix-for-CVE-2021-26222-ezxml-bug-22.patch
* Fri Jan 29 2021 [email protected]
- Define-byteswap-functions-before-use.patch:
Define byteswap() functions before use (bsc#1181523).
* Wed Dec 09 2020 [email protected]
- Change 'Requires:' to hdf5 to %requires_eq to match the exact
version of hdf5 in the dependency. This should take care of
HPC packages ignoring proper ABI versioning (boo#1179521).
* Fri Nov 06 2020 [email protected]
- Update to version 4.7.4.
* Support has been added for HDF5-1.12.0.
* Support has been added for multiple filters per variable.
* Now nc_inq_var_szip retuns 0 for parameter values if szip is not in
use for var.
* Now allow parallel I/O with filters, for HDF5-1.10.3 and later.
* Increased default size of cache buffer to 16 MB, from 4 MB. Increased
number of slots to 4133.
* Allow zlib compression to be used with parallel I/O writes, if HDF5
version is 1.10.3 or greater.
* Restore use of szip compression when writing data (including writing
in parallel if HDF5 version is 1.10.3 or greater).
* Enable use of compact storage option for small vars in netCDF/HDF5 files.
* Updated benchmarking program bm_file.c to better handle very large files.
* Added version number to dispatch table, and now check version with
nc_def_user_format().
* Increased size of maximum allowed name in HDF4 files to NC_MAX_NAME.
* Bug Fixes:
- Correct behavior for the command line utilities when
directly accessing a directory using utf8 characters.
- Attempts to set filters or chunked storage on scalar vars will now
return NC_EINVAL. Scalar vars cannot be chunked, and only chunked
vars can have filters. Previously the library ignored these attempts,
and always storing scalars as contiguous storage.
- Fixed problem of growing memory when netCDF-4 files were
opened and closed.
Further details can be found at:
https://github.com/Unidata/netcdf-c/releases/tag/v4.7.4
- Bump soname from 15 to 18.
- Add Fix-logging-argument.patch:
Fix argument to logging function.
- get_filter_info-get-correct-number-of-filter-elements.patch
Fix intermittend issue found by unit tests.
* Mon Aug 17 2020 [email protected]
- Ignore make check error for ppc64 & s390x
(both failed on tst_filter.sh) tracked upstream
via email subject [netCDF #XWG-388823]
* Thu Jul 23 2020 [email protected]
- Add build support for gcc10 to HPC build (bsc#1174439).
- Remove unused build option.
* Mon Jul 20 2020 [email protected]
- Add support for OpenMPI 4 (disabled on < 15.3)
* Mon Jul 20 2020 [email protected]
- Remove requirements for parallel-netcdf from non-HPC builds:
without the '--enable-pnetcdf' configure option, this doesn't
make sense.
* Mon Jul 20 2020 [email protected]
- Remove build restrictions for SLE builds: build all flavors for
SLE.
- Fix ldconfig args for HPC packages: no caching should be done
as these libs are made available thru LD_LIBRARY_PATH tweaking.
- Adhere to common conventions regarding NetCDF and PnetCDF:
NetCDF modules should be called 'netcdf' - regardless whether
they are 'serial' or use MPI (boo#1174291).
* Sat Mar 28 2020 [email protected]
- Build macro package netcdf-devel-data only for non-HPC builds
(boo#1167947).
* Wed Jan 22 2020 [email protected]
- Update to version 4.7.3:
* Library was modified so that rewriting the same attribute happens without
deleting the attribute, to avoid a limit on how many times this may be
done in HDF5.
* Now testing that endianness can only be set on atomic ints and floats.
* Fix for subtle error involving var and unlimited dim of the same name, but
unrelated, in netCDF-4. See [https://github.com/Unidata/netcdf-c/issues/1496].
* Update for attribute documentation. See [https://github.com/Unidata/netcdf-c/issues/1512].
* Corrected assignment of anonymous (a.k.a. phony) dimensions in an HDF5 file.
* Corrected an issue where protected memory was being written to with some pointer
slight-of-hand.
* Sat Nov 30 2019 [email protected]
- Fix openmpi naming for Leap 15.x
- Correct some conditionals, matching for "openmpi" instead of
"openmpi1".
- Add non-HPC openmpi3 build flavor
- Some spec file cleanup (trailing whitespace).
* Fri Nov 29 2019 [email protected]
- Add support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8604).
* Thu Nov 28 2019 [email protected]
- Update to version 4.7.1:
* Remove obsolete _CRAYMPP and LOCKNUMREC macros from
code. Also brought documentation up to date in man page.
* Remove obsolete and deprecated functions nc_set_base_pe()
and nc_inq_base_pe() from the dispatch table. (Both functions
are still supported in the library, this is an internal
change only.)
* Fix: Reverted nccopy behavior so that if no -c parameters are
given, then any default chunking is left to the netcdf-c library
to decide.
- Disable openmpi1 builds for SLE/Leap > 15.1.
- Enable openmpi3 builds for Leap and SLE > 15.1 (jsc#SLE-7773).
* Thu Oct 24 2019 [email protected]
- openmpi has been renamed to openmpi1
* Wed Oct 23 2019 [email protected]
- Fix package description: Use macro to generate the correct information.
* Sun Sep 08 2019 [email protected]
- Use FAT LTO objects in order to provide proper static library.
- Readd optflags to CFLAGS again. The motivating issue has been solved
(https://github.com/Unidata/netcdf-c/issues/244), and without
optflags the lto flags were only applied to parts of the build,
causing broken static libraries.
* Fri Sep 06 2019 [email protected]
- Bump soversion, use it in the files section (so it fails the next
time the version update is omitted), and remove the rpmlintrc
also hiding the problem.
* Mon Aug 26 2019 [email protected]
- Update to version 4.7.0 (jsc#SLE-8500), see changes from 4.6.1 at:
* https://www.unidata.ucar.edu/blogs/news/entry/netcdf-4-7-0
* https://www.unidata.ucar.edu/blogs/news/entry/netcdf-4-6-3
* https://www.unidata.ucar.edu/blogs/news/entry/netcdf-4-6-2
- Update Source to rename the tarball as netcdf instead of netcdf-c
* Wed Feb 13 2019 [email protected]
- Consolidate use of openmpi1, openmpi2, openmpi3.
* Mon Jan 07 2019 [email protected]
- Add support for openmpi2 flavor
* own directories below _mandir for all MPI flavors
* no support for parallel_netcdf yet, same as for HPC flavors
- Enable valgrind support also for aarch64
- defattr, license spec file cleanup
* Wed Nov 14 2018 [email protected]
- Only create a single devel-data subpackage providing the identical
macros.netcdf, and require it by both serial and openmpi devel packages.
* Tue May 08 2018 [email protected]
- go back to hdf5 1.10
* Mon Apr 30 2018 [email protected]
- Fix devel-data package conflicts by a Provides/Conflicts that
doesn't collide with a package name.
* Mon Apr 30 2018 [email protected]
- Remove the 'ring magic' as this seems to create issues during
verification.
* Mon Apr 30 2018 [email protected]
- (Temporarily) disable fpr S390* as a check test fails currently
on BE.
* Mon Apr 30 2018 [email protected]
- Fix dependency issues with non-HPC devel packages and
devel-data.
* Mon Apr 30 2018 [email protected]
- Add a dependency to the HPC master package of the correct
flavor of libhdf5_hl (bsc#1091243).
* Tue Apr 24 2018 [email protected]
- Avoid file conflict between devel-data packages over rpm macros.
* Wed Apr 11 2018 [email protected]
- Disable non-HPC builds on non-openSUSE systems:
a. currently only SUSE products/projects are supported/
b. non-HPC builds are not and have never been supported on SLE,
on openSUSE they are provided for compatibility reasons.
* Wed Apr 04 2018 [email protected]
- update to version 4.6.1 (FATE#325561)
* changes since 4.4.4.1 are documented here:
https://www.unidata.ucar.edu/blogs/news/entry/netcdf-4-6-1
https://www.unidata.ucar.edu/blogs/news/entry/netcdf-4-6-0
https://www.unidata.ucar.edu/blogs/news/entry/netcdf-4-5-0
- Obsoletes all patches:
netcdf-disable-szip-linking.patch
netcdf-h5-test-fix-type-mismatch.patch
netcdf-no_date_time.patch
- drop hdf4 support
- use version 1.8 of hdf5 in non-hpc mode to avoid incompatible
on-disk data
* Fri Feb 09 2018 [email protected]
- Add support for openmpi2 for HPC (FATE#325089).
* Fri Feb 09 2018 [email protected]
- Fix summary in module files (bnc#1080259)
* Fri Jan 19 2018 [email protected]
- Change the name of the MPI version of the module file directory
to pnetcdf to distinguish it from the 'serial' one (boo#1075933).
* Fri Jan 12 2018 [email protected]
- Disable the openmpi3 flavor in some products.
* Fri Jan 05 2018 [email protected]
- Switch from gcc6 to gcc7 as additional compiler flavor for HPC on SLES.
- Add support for mpich and openmpi3 for HPC.
* Fri Nov 10 2017 [email protected]
- Add dependency on the hpdf5 library package
to the netdf libary package.
* Thu Nov 02 2017 [email protected]
- Simplify Group: - do not destinguish between MPI
and non-MPI: the IBS check scripts cannot handle
this well.
* Mon Oct 30 2017 [email protected]
- Fix wrong Requires: in static package.
* Sat Oct 28 2017 [email protected]
- Add minimal mpi-selector support for non-HPC MPI build.
This will avoid the MPI packages to conflict with the
'serial' ones as both provide the same files and libs.
* Sat Oct 28 2017 [email protected]
- Fix botched dependency for libpnetcdf-<mpi-flavor>.
* Tue Oct 24 2017 [email protected]
- Added patch netcdf-h5-test-fix-type-mismatch.patch
* Fixes type mismatch in test tst_h_dimscales
(bsc#1064705).
* Thu Oct 19 2017 [email protected]
- Source mpivars.sh to fix the non-HPC openmpi %check.
* Tue Oct 17 2017 [email protected]
- Add magic to limit the number of flavors built in the
in the OBS ring.
* Wed Sep 13 2017 [email protected]
- Incorporated HPC-style builds using environment modules.
- Converted to multibuild (FATE#321719).
- renamed rpmlintrc to netcdf-rpmlintrc.
- Generate baselib.conf dynamically and only for the non-HPC
build: this avoids issues with the source validator.
* Tue Sep 12 2017 [email protected]
- Update to version 4.4.1.1:
- Fixed an issue where ncgen would potentially crash or write
incorrect netCDF4 binary data under very specific
circumstances [gh#Unidata/netcdf-c#323].
- Updated documentation related to netCDF variable names and
DAP2 access to reflect the undefined behavior potentially
observed when DAP2 reserved keywords are used as netCDF
variable names.
- Fixed an issue with nc_inq_type() not returning proper value
in some circumstances [gh#Unidata/netcdf-c#317].
- Corrected an issue related to test failures when
- -disable-utilities or -DENABLE_UTILITIES=OFF are specified
when building with autotools or cmake, respectively
[gh#Unidata/netcdf-c#313].
- Corrected a behavioral issue with the _NCProperties attribute
taking up too much space [gh#Unidata/netcdf-c#300],
[gh#Unidata/netcdf-c#301].
- Corrected behavior for nc-config so that, if nf-config is
found in system, the proper fortran-related information will
be conveyed [gh#Unidata/netcdf-c#296].
- Add netcdf-disable-szip-linking.patch: Disable building with
szip support for now, since test nc_test4/tst_interops5.c fails
otherwise; this is likely to be fixed with version 4.5.0 of
netcdf, but requires big enough changes that we don't backport
it here. Necessitates BuildRequires on libtool and running
autoreconf before configure.
* Thu Feb 09 2017 [email protected]
- Explicitly BuildRequire m4
* Sat Aug 06 2016 [email protected]
- Remove %{optflags} from CFLAGS for now to fix build with hdf5-1.10
in Factory, see https://github.com/Unidata/netcdf-c/issues/244
* Sun Jul 31 2016 [email protected]
- Add 32bit version to satisfy libavfilter6-32bit
* Sun Jul 17 2016 [email protected]
- Trim descriptions. (libnetcdf11 will be the prominently installed
one and therefore retains it mostly.)
* Fri Jul 15 2016 [email protected]
- As far as I can find the settings file is only needed for
development.
* Tue Jul 05 2016 [email protected]
- update to version 4.4.1
Details can be found in the RELEASE_NOTES file.
- Note: The combination of netCDF-C library versions earlier than
4.4.1 and libhdf5 1.10.0+ should be avoided, as they will result
in binary files not readable by systems using earlier libhdf5 versions.
* Thu Mar 31 2016 [email protected]
- Regenerate ncx.c from ncx.m4. Tarball doesn't have fresh copy
of it. https://github.com/Unidata/netcdf-c/issues/159
* Wed Mar 16 2016 [email protected]
- Update to version 4.4.0. Highlights:
* Added CDM-5 support.
* Added support for opening in-memory file content.
* Modified CMakeLists.txt to work with the re-organized cmake
configuration used by the latest HDF5, 1.8.16, on Windows.
Before this fix, netCDF would fail to locate hdf5 1.8.16 when
using cmake on Windows.
* Modified ncgen to properly handle the L and UL suffixes for
integer constants to keep backward compatibility.
- Remove netcdf-correct_casting.patch, rendered irrelevant by
upstream change.
- Remov upstream-included netcdf-codecleanup.patch and
netcdf-pkgconfig.patch
- Rebase netcdf-no_date_time.patch
* Sat Nov 21 2015 [email protected]
- install netcdf_par.h which is skipped when mpicc in not detected
* Mon Aug 24 2015 [email protected]
- Currently the regular, openmpi, and mpivachi2 versions of the
library packages all provide the exact same libraries. So any
package built against the -devel package will end up with an
"unresolvable" build error because there are multiple versions
of the library it can use. To avoid this, I have added generic
provides for the library package so packages can depend on the
version they really need, avoiding these build issues.
- Depend on the correct regular, openmpi, and mpivachi2 versions of
hdf, hdf5, and parallel-netcdf.
* Mon Jul 27 2015 [email protected]
- Update subpackage groups
- Make subpackage summaries and descriptions more consistent
- Provide rpm macros for version identification
- Spec file cleanups
- Build parallel versions of the library.
* Fri Jul 24 2015 [email protected]
- Build with HDF4 support
* Sat Apr 18 2015 [email protected]
- Update to version 4.3.3.1
* When the NC_MPIPOSIX flag is given for parallel I/O access and
the HDF5 library does not have the MPI-POSIX VFD configured in,
the NC_MPIPOSIX flag is transparently aliased to the NC_MPIIO
flag within the netCDF-4 library.
* DAP requests now always include a restraint. Due to a problem in
version 4.3.2, no constraint was generated when all variables were
requested.
* Fixed the code for handling character constants in datalists in
ncgen. Two of the problems were:
- It failed on large constants
- It did not handle e.g.
- var = 'a', 'b', …
in the same way that ncgen3 did.
- Changes from version 4.3.3
* Fixed bug resulting in error closing a valid netCDF-4 file with
a dimension and a non-coordinate variable with the same name.
[NCF-324](https://bugtracking.unidata.ucar.edu/browse/NCF-324)
* Enabled previously-disabled shell-script-based tests for Visual
Studio when `bash` is detected.
- Update netcdf-no_date_time.patch
/usr/lib64/mpi/gcc/openmpi2/lib64/libnetcdf.so.18 /usr/lib64/mpi/gcc/openmpi2/lib64/libnetcdf.so.18.0.0 /usr/share/modules /usr/share/modules/netcdf-openmpi2 /usr/share/modules/netcdf-openmpi2/4.7.4
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