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| Name: python313-astropy | Distribution: openSUSE:Factory:RISCV |
| Version: 6.1.7 | Vendor: openSUSE |
| Release: 1.1 | Build date: Wed Nov 27 16:43:23 2024 |
| Group: Unspecified | Build host: reproducible |
| Size: 46992725 | Source RPM: python-astropy-6.1.7-1.1.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://astropy.org | |
| Summary: Community-developed python astronomy tools | |
Astropy is a package intended to contain core functionality and some common tools needed for performing astronomy and astrophysics research with Python. It also provides an index for other astronomy packages and tools for managing them.
BSD-3-Clause
* Wed Nov 27 2024 Ben Greiner <[email protected]>
- Update to 6.1.7
* Fix an issue in sigma-clipping where the use of np.copy() was
causing the input data mask to be discarded in cases where grow
was set. [#17402]
* Tue Nov 19 2024 Dirk Müller <[email protected]>
- update to 6.1.6:
* Fixed instantiating Angle from a pandas Series object.
* Fixed calling np.nanvar and np.nanstd with Quantity out
argument.
* Fri Nov 08 2024 Ben Greiner <[email protected]>
- Update to 6.1.5
[#]# Bug Fixes
[#]## astropy.coordinates
* Ensure that coordinates can be transformed to other coordinate
frames also if they have size zero (i.e., hold empty data
arrays). [#17013]
* Longitude and Latitude can no longer be initialized with
strings ending in “N” or “S”, and “E” or “W”, respectively,
since those suggest the other type. [#17132]
* np.nanvar(angle) now produces a Quantity with the correct unit,
rather than raising an exception. [#17239]
* Fix a crash when instantiating Angle (or Latitude, or
Longitude) from a non-numpy array (for instance pyarrow
arrays). [#17263]
[#]## astropy.io.fits
* Fix access to VLA columns after slicing .data. [#16996]
[#]## astropy.io.votable
* Updated xml writer for VOTable Resource elements to include
groups. [#17344]
[#]## astropy.nddata
* Add support for positional only and keyword only arguments when
using the support_nddata decorator. [#17281]
[#]## astropy.stats
* Fixed a bug where float32 inputs to sigma_clip and SigmaClip
were changed to float. [#17086]
[#]## astropy.table
* Fix a crash when calling Column.pprint on a scalar column.
[#15749]
* Ensure that setting an existing column to a scalar always
properly fills it (rather than breaking the table if there was
only one column in it). [#17105]
[#]## astropy.units
* The unit parsers are now better at recognizing unusual
composite units:
- units involving special unicode symbols, like “L☉/pc²”;
- units that include CDS units ending in a 0, like “eps0/s”;
- units including the degree symbol, “°”. For example, “°C/s”
is no longer incorrectly interpreted as “°C/s^2”. [#17011]
* Converting the ohm to a string with the OGIP unit formatter
(e.g. f"{u.ohm:ogip}") previously produced the string 'V / A',
but now produces 'ohm' as expected. [#17200]
* The OGIP unit formatter now handles the unit day and the
corresponding string "d" in full compliance with the standard.
[#17216]
* The "ogip" unit format now represents the unit angstrom as
"angstrom" instead of "0.1 nm". [#17241]
[#]## astropy.utils
* Ensure that queries of .ut1_utc() and .pm_xy() return the
correct results also when passing in an empty array of times.
[#17013]
* Fixed a bug where astropy’s logger wouldn’t perform lazy string
interpolation. [#17196]
[#]## astropy.visualization
* Fixed a bug that caused CoordinateHelper.get_axislabel() to
return an empty string instead of the default label if no label
has been explicitly provided. [#17175]
[#]## astropy.wcs
* Fixed a bug that caused WCS.slice to ignore numpy_order and
always interpret the slices as if numpy_order was True, in the
specific case where the slices were such that dimensions in the
WCS would be dropped. [#17147]
- Release 6.1.4
[#]# Bug Fixes
[#]## astropy.coordinates
* Keep Latitude from printing long input arrays in their entirety
when failing limits check in _validate_angles, indicating their
range instead. [#13997]
* Avoid some components not being included in table output of
coordinates if the representation type was "unitspherical".
* In the process, also ensured that one can pass in the
radial_velocity keyword argument if one uses
differential_type="radial". [#16999]
[#]## astropy.io.votable
* Ensure proper handling of null values during BINARY2
serialization. Previously, masks were handled in two different
ways for BINARY2 serialization, resulting in incorrect handling
of null values and errors. [#16091]
[#]## astropy.stats
* Fixed a bug in biweight_location, biweight_scale, and
biweight_midvariance where the returned array shape would be
wrong if the input array had an axis length of 1 along any axis
that was not included in the axis keyword. Also fixed a bug in
these same functions where for constant data and axis set to a
tuple containing all axes, the returned value would be NaN
instead of the constant value. [#16964]
[#]## astropy.table
* Ensure that initializing a QTable with explicit units` also
succeeds if one of the units is u.one. [#17048]
[#]## astropy.units
* An exception is now raised if it is attempted to create a unit
with a scale of zero, avoiding bugs further downstream
(including surprising ones, such as a comparison of
np.ma.masked == u.one leading to a ZeroDivisionError). [#17048]
[#]## astropy.wcs
* Fix a bug that caused the results from
local_partial_pixel_derivative to be incorrect when using
normalize_by_world=True (the matrix was previously normalized
along the wrong axis) [#17003]
[#]# Other Changes and Additions
* Minimal requirement for (optional dependency) matplotlib was
bumped to 3.5.0, which is the oldest version with support for
Python 3.10 [#16993]
* Fri Aug 30 2024 Ben Greiner <[email protected]>
- Update to 6.1.3
[#]# Bug Fixes
[#]## astropy.io.fits
* Fix reading zero-width columns such as 0A fields. [#16894]
* Ensure that QTable, like Table, can read zero-length string
columns, and not convert them to length 1 strings. In the
process, avoid a needless copy of all the data for QTable.
[#16898]
[#]## astropy.io.votable
* Fix KeyError when parsing certain VOTables. [#16830]
[#]## astropy.modeling
* Fixed the fit_deriv calculations in the Lorentz1D model.
[#16794]
[#]## astropy.table
* Pretty-printing of Tables now also works in the presence of
zero-length string columns (which sometimes are present in FITS
tables). [#16898]
[#]## astropy.utils
* Fix the return type for np.broadcast_arrays on a single Masked
instance: it now correctly returns a 1-element sequence instead
of a single array, just like would be the case with a regular
array. [#16842]
[#]## astropy.wcs
* Fix a bug where wcs_info_str’s results would look different in
numpy 2 VS numpy 1. [#16586]
[#]# Other Changes and Additions
* The minimum required version of PyArrow is now v7.0.0. [#16785]
* Fri Aug 16 2024 Benjamin Greiner <[email protected]>
- Don't require numpy 2.
* Fri Aug 09 2024 Dirk Müller <[email protected]>
- update to 6.1.2:
* When reading CDS and MRT files, only interpret a line as a
section delimiter if it contains exclusively dashes or equal
signs. This enables rows starting with dashes.
* Fix a spurious exception when reading integer compressed
images with blanks.
* Fixed a crash that occurred for files opened via
fits.open(..., mode='update'), on Windows, and with numpy 2.0
installed. A warning is now emitted in cases most likely to
escalate into undefined behavior (e.g., segfaults), i.e.,
when a closed memory map object is still referenced by
external code. Please report any regression found.
* Fixed a bug that caused models returned by non-linear fitters
to have sync_constraints set to False, which caused
constraints accessed through, e.g., Model.fixed to not be in
sync with the fixed attribute of the parameters.
* Fixed a bug that caused CompoundModel.without_units_for_data
to return an incorrectly constructed model when the compound
model contained a * or / operation, and which also caused
fitting to not work correctly with compound models that
contained * or / operations.
* The OGIP parser is now less restrictive with strings that
represent a unit that includes the sqrt function. For
example, u.Unit("sqrt(m)**3", format="ogip") no longer causes
a ValueError.
* Fixed an edge-case bug in overlap_slices where the function
could return an empty slice for non-overlapping slices.
* Fixed a WCSAxes bug when overlaying a frame with default
units that are not degrees.
* Thu Jul 11 2024 Ben Greiner <[email protected]>
- Revert numpy restriction.
* Thu Jul 11 2024 Steve Kowalik <[email protected]>
- Restrict numpy to < 2.
* Tue Jun 25 2024 Steve Kowalik <[email protected]>
- Update to 6.1.1:
* Let fitsdiff compare files with lower case HIERARCH keywords
* Fix writing a ``HDUList`` to file when numpy 2 is installed and at least
some of the data is represented as dask arrays.
* Fix display of diff reports with numpy 2.
* Ensure that also zero-length tables preserve whether integer data are
signed or unsigned.
* Fix YAML table serialization compatibility with numpy 2.
* Fix bugs in io.votable related to numpy 2's representation of scalars.
* Ensure that return types from ``sigma_clip`` ``cenfunc`` and ``stdfunc``
are np.float64 for scalar values.
* Ensure structured ``MaskedColumn`` are serialized correctly, including
the mask.
* Fix problems converting Pandas Series to ``Table`` with numpy >=2.0.
* Ensure Time in ymdhms format can also be serialized to files as part of a
table if it is masked.
* Ensure Masked versions of ``np.recarray`` will show the correct class
name of ``MaskedRecarray`` in their ``repr``, and that they will be
serialized correctly if part of a table.
* Fix bugs with how masked structured arrays were represented with numpy 2.
* ``MaskedQuantity`` now works properly with ``np.block``.
* Fix a bug where ``WCSAxes`` could be missing negative signs on axis
labels when using matplotlib's ``usetex`` mode.
* Fix compilation with gcc 14, avoid implicit pointer conversions.
- Drop patch 16450.patch, included upstream.
- Remove upper bound on pytest, no longer required.
* Mon May 27 2024 John Paul Adrian Glaubitz <[email protected]>
- Cherry-pick upstream patch to fix build with GCC 14
* https://github.com/astropy/astropy/pull/16450.patch
* Sun May 05 2024 Ben Greiner <[email protected]>
- Update to 6.1.0
[#]# Highlights
* Updated minimum Python version to 3.10
* Order-dependent angular separations now come with warnings
* io.ascii uses 64-integers by default for integer columns
* Changes to semantics of copy= keyword arguments
* Cosmology is now a dataclass()
[#]# New Features
[#]## astropy.coordinates
* BaseCoordinateFrame now has a position_angle() method, which is
the same as the position_angle method of SkyCoord instances.
[#15737]
* By default the SkyCoord and BaseCoordinateFrame separation()
methods now emit a warning if they have to perform a coordinate
transformation that is not a pure rotation to inform the user
that the angular separation can depend on the direction of the
transformation. It is possible to modify this behaviour with
the new optional keyword-only origin_mismatch argument.
Specifying origin_mismatch="ignore" allows any transformation
to succeed without warning, which has been the behaviour so
far. origin_mismatch="error" forbids all transformations that
are not pure rotations. [#16246]
[#]## astropy.io.ascii
* Clearer error message in reading ASCII tables when there is a
mismatch between converter type and column type. [#15991]
[#]## astropy.io.registry
* The module astropy.io.typing has been added to provide type
annotations for I/O-related functionality. [#15916]
[#]## astropy.samp
* SAMP web profile CORS HTTP server implements Private Network
Access proposal. [#16193]
[#]## astropy.table
* Table now has a setdefault() method, analogous to
dict.setdefault(). [#16188]
[#]## astropy.units
* Added a new module astropy.units.typing that provides support
for type annotations related to astropy.units. [#15860]
* Added a new CGS unit Oersted. [#15962]
* Added “surface brightness”, “surface brightness wav”, “photon
surface brightness”, and “photon surface brightness wav” to
recognized physical types. [#16032]
* Added magnetic helicity as a physical type. [#16101]
[#]## astropy.utils
* For gufuncs on Masked instances, add support for the axes
argument. [#16121]
* Masked instances now support the various numpy array set
operations, such as np.unique and np.isin. [#16224]
[#]## astropy.wcs
* Added support for slicing WCS objects containing cpdis or
det2im distortions, which previously were ignored. [#16163]
[#]# API Changes
[#]## astropy.coordinates
* The astropy.coordinates.transformations module has been
refactored into a module. There should be no user-visible
changes, but if you notice any, please open an Issue. [#15895]
* Changed the default value of the copy argument in
astropy.coordinates.representation.CylindricalDifferential.__init__
from False to True, which is the intended behaviour for all
subclasses of
astropy.coordinates.representation.BaseDifferential. [#16198]
[#]## astropy.cosmology
* Cosmology and its subclasses are now frozen dataclass objects.
[#15484]
* The argument verbose in the function z_at_value is now
keyword-only. [#15855]
[#]## astropy.io.ascii
* The io.ascii Python and C table readers were updated to use a
64-bit integer field by default when reading a column of
integer numeric data. This changes the default behavior on
Windows and potentially 32-bit architectures. Previously on
those platforms, table columns with any long integers which
overflowed the 32-bit integer would be returned as string
columns. The new default behavior is consistent with numpy v2
and pandas. [#16005]
* The parallel fast-reader parser for reading ASCII files has
been removed. Since astropy v4.0.4 requesting this option has
issued a warning that this option is broken and that the serial
parser will be used. The parallel key in the fast_reader
argument for reading ASCII tables is no longer available.
[#16103]
[#]## astropy.table
* show_in_notebook is deprecated and it is recommended to use
dedicated tools in the Jupyter ecosystem to create interactive
plots in notebooks. [#15905]
* A warning is now emitted when Quantity values are inserted into
empty Column objects via Table.insert_row or Table.add_row.
[#16038]
* show_in_browser is deprecated (pending feedback from the
community). Please use astropy/astropy#16067 if you are
actively using the function. [#16068]
* TableColumns.setdefault() and TableColumns.update() methods
(which would typically be called as Table.columns.setdefault()
and Table.columns.update()) have been deprecated because they
can easily corrupt the Table instance the TableColumns instance
is attached to. The Table.setdefault() and Table.update()
methods are safe. [#16154]
[#]## astropy.time
* TIME_FORMATS and TIME_DELTA_FORMATS in astropy.time.formats are
changed from OrderedDict to Python dict. [#15491]
* A FutureWarning is now emitted when mutating Time.location
post-initialization. [#16063]
* Following the removal of np.ndarray.ptp in Numpy v2, Time.ptp
is now deprecated in favor of np.ptp. [#16212]
[#]## astropy.units
* If any iterable such as a list of tuple was input to Quantity,
a check was done to see if they contained only quantities, and,
if so, the quantities were concatenated. This makes sense for
list and tuple, but is not necessarily logical for all
iterables and indeed was broken for those that do not have a
length (such as array_api array instances). Hence, the check
will now be done only for values where it makes sense, i.e.,
instances of list and tuple. [#15752]
* Units now exposes get_converter which returns a function that
will convert a scalar or array from one unit to another. This
can be useful to speed up code that converts many quantities
with the same unit to another one, especially if the quantity
has not many elements, so that the overhead of creating a
conversion function is relatively large. [#16139]
[#]## astropy.utils
* Deprecate importing ErfaError and ErfaWarning from
astropy.utils.exceptions. They should be imported directly from
erfa instead. [#15777]
* introspection.isinstancemethod() and
introspection.find_mod_objs() are deprecated. [#15934]
* astropy.utils.console.terminal_size is now deprecated in favour
of shutil.get_terminal_size from the standard library. [#16045]
* indent() is deprecated. Use textwrap.indent() from Python
standard library instead. [#16223]
* Unmasked Masked scalar instances are now considered hashable,
to match the implicit behaviour of regular arrays, where if an
operation leads to a scalar, a hashable array scalar is
returned. [#16224]
[#]## astropy.visualization
* Renamed the min_cut and max_cut keywords in simple_norm and
fits2bitmap to vmin and vmax. The old names are deprecated.
[#15621]
* If vmin == vmax, the ImageNormalize class now maps the input
data to 0. If vmin > vmax, the ImageNormalize class now raises
a ValueError. [#15622]
[#]# Bug Fixes
[#]## astropy.convolution
* Avoid a segfault when calling astropy.convolution.convolve on
an empty array. An exception is now raised instead. [#15840]
[#]## astropy.coordinates
* Previously passing a SkyCoord instance to the
BaseCoordinateFrame separation() or separation_3d() methods
could produce wrong results, depending on what additional frame
attributes were defined on the SkyCoord, but now SkyCoord input
can be used safely. [#15659]
* Distance now accepts as parallax any angle-like value. This
includes types like Column which have a unit but are not
Quantity subclasses. [#15712]
* The new default for the class method SkyCoord.from_name() is to
look for coordinates first in SIMBAD, then in NED, and then in
VizieR, instead of having no specific order. [#16046]
* Fix Angle.to_string() for angles in degrees represented in
‘hms’ and angles in hours represented in ‘dms’. [#16085]
* Fix a bug where SkyCoord.spherical_offsets_by would crash when
a wrap was needed. [#16241]
* search_around_3d() now always raises a UnitConversionError if
the units of the distances in coord1 and coord2 and the unit of
distlimit do not agree. Previously the error was not raised if
at least one of the coordinates was empty. [#16280]
[#]## astropy.cosmology
* Fixed a bug where the attribute ParametersAttribute.attr_name
could be None instead of a string. [#15882]
[#]## astropy.io.ascii
* Reading of CDS header files with multi-line descriptions where
the continued line started with a number was broken. This is
now fixed. [#15617]
* Ensure that the names of mixin columns are properly propagated
as labels for the MRT format. [#15848]
* Fixed reading IPAC tables for long column type on some
platforms, e.g., Windows. [#16005]
[#]## astropy.io.fits
* Avoid WinError 1455 in opening some large files with memory
mapping on windows. [#15388]
* Fix TDISP parsing for floating numbers. [#16007]
* Fix a crash when calling FITS writeto methods with stdout as
the output stream. [#16008]
* Fix TDISP parsing for floating numbers in formats ES / EN.
[#16015]
* Fix conversion of Table to BinTableHDU with
character_as_bytes=True. [#16358]
* Improved error message when instantiating a fits table with an
ill-formed array. [#16363]
[#]## astropy.io.misc
* Reading an empty table stored in parquet format now creates an
empty table instead of raising an unexpected error. [#16237]
[#]## astropy.io.votable
* When reading a VOTable, if some user-requested columns were not
present then the resulting error message previously listed all
the requested column names. Now only columns that are actually
missing are shown. [#15956]
[#]## astropy.stats
* Fix a spurious warning when calling sigma_clipped_stats on a
MaskedColumn. [#15844]
[#]## astropy.table
* Fix a Table bug when setting items (via slice or index list) in
a bytes type MaskedColumn would cause the column mask to be set
to all False. A common way to trigger this bug was reading a
FITS file with masked string data and then sorting the table.
[#15669]
* Fix slicing logic for Row. Previously, slicing a
astropy.table.row.Row object would incorrectly return a column,
now it correctly returns a list of values from that row.
[#15733]
* Fix a ValueError raised by table.join when fed with large
tables. This would typically happen in situations when the
result joined table would be too large to fit in memory. In
those situations, the error message is now much more clearly
about the necessary memory size. [#15734]
* Fix an unintended exception being raised when attempting to
compare two unequal Table instances. [#15845]
* Ensure that if a Column is initialized with a Quantity it will
use by default a possible name defined on the quantity’s .info.
[#15848]
* Fix a bug where columns with dtype=object wouldn’t be properly
deep-copied using copy.deepcopy. [#15871]
* Fix hasattr(Table, "iloc") raising an exception, preventing use
of tables e.g. with scikit-learn. [#15913]
* Calling Table.group_by on an empty table no longer raises an
exception. [#16093]
* The unit conversion convert_unit_to with MaskedColumn was
broken as it was storing the old unit in a dictionary attached
to underlying np.ma.MaskedArray. This fixes it by overwriting
the old unit after unit conversion. [#16118]
* astropy.table.vstack will no longer modify the input list even
when it contains non-Table objects like astropy.table.Row.
[#16130]
* Update old dataTables.js version. This should not affect the
end user. [#16315]
[#]## astropy.time
* Fix comparing NaN Quantity with TimeDelta object. [#15830]
* Scalar Time instances are now hashable if they are not masked,
also if one uses Masked internally, matching the behaviour
prior to astropy 6.0 (and the current behaviour when masking
using np.ma.MaskedArray). [#16224]
[#]## astropy.units
* Fix rare signature incompatibilities between helper and helped
array functions. Most involve cases where the corresponding
numpy function has had its arguments renamed between numpy
versions. Since all those generally changed the first
arguments, which are typically passed as positional arguments,
this should not affect user code. Affected functions: -
numpy.array_str - numpy.choose - numpy.convolve -
numpy.correlate - numpy.histogram - numpy.histogramdd -
numpy.histogram2d - numpy.isin - numpy.inner - numpy.nanmedian
- numpy.unique - numpy.matrix_rank - numpy.unwrap - numpy.vdot
- numpy.lib.recfunctions.unstructured_to_structured [#15710]
* Fix an issue with unicode string representations of units shown
as superscripts (like degree) when raised to some power. Like
for LaTeX representations, now the superscript unicode
character is replaced by the literal short name before adding
the power. [#15755]
* Fix a missing Sun unit in the list of VOUnits simple_units.
[#15832]
* Fix an unhelpful TypeError when attempting truediv, lshift (<<)
or mul (*) or truediv (/) with a Unit for right operand and a
numpy array with non-numerical dtype for left operand. [#15883]
* Fix write/read roundtrips with empty Table dumped to ECSV.
[#15885]
* Fix a bug where LaTeX formatter would return empty strings for
unity (1) input. [#15923]
* Fix extraneous space in LaTeX repr for Quantity objects with
superscript units (e.g. angles or temperatures in degree
Celsius). [#16043]
* Ensure powers of units are consistently as simple as possible.
So, an integer if possible, otherwise a float, or a fraction if
the float is really close to that. This also ensures the hash
of a unit is unique for any given unit (previously, the same
power could be represented as float, int or fraction, which
made the hash different). [#16058]
* Ensure that find_equivalent_units only returns actual units,
not units that raised to some power match the requested one.
With this fix, (u.m**-3).find_equivalent_units() properly finds
nothing, rather than all units of length. [#16127]
* Using a dimensionless Quantity as an exponent works anew. In
astropy 6.0.1 an exception was erroneously raised. [#16261]
[#]## astropy.utils
* Fix rare signature incompatibilities between helper and helped
array functions. These typically cover corner cases and should
not affect user code. Some arguments weren’t being re-exposed
correctly or at all, depending on numpy’s version. Affected
functions: - numpy.broadcast_arrays - numpy.median -
numpy.quantile - numpy.empty_like - numpy.ones_like -
numpy.zeros_like - numpy.full_like [#16025]
* Fix a bug where astropy.utils.console.Spinner would leak
newlines for messages longer than terminal width. [#16040]
* Update report_diff_values so the diff no longer depends on the
console terminal size. [#16065]
* Fix support in Masked for generalized ufuncs with more than a
single core dimension (such as erfa.rxp). [#16120]
* Masked array instances now deal more properly with structured
dtypes, combining field masks to get element masks for
generalized ufuncs, and allowing .view() any time the mask can
be viewed as well. This allows a larger number of erfa routines
to work with masked data. [#16125]
[#]## astropy.visualization
* WCSAxes will correctly set certain defaults when
wcs.world_axis_physical_types contains custom: prefixes.
[#15626]
* Fix an edge case where quantity_support would produce duplicate
tick labels for small data ranges. [#15841]
* Fix a bug where AngleFormatterLocator and
ScalarFormatterLocator wouldn’t respect matplotlib.rc’s
axes.unicode_minus parameter. [#15902]
* Fixed a bug in CoordinateHelper.grid method to properly handle
draw_grid=False and draw_grid=None, ensuring grid lines are
controlled correctly even when not explicitly called. [#15985]
[#]## astropy.wcs
* Updated bundled WCSLIB version to 8.2.2. This update fixes
character buffer overflows in the comment string for the
longitude and latitude axes triggered by some projections in
wcshdo(), and also the formatting for generic coordinate
systems. For a full list of changes - see
http://www.atnf.csiro.au/people/mcalabre/WCS/CHANGES or
astropy/cextern/wcslib/CHANGES [#15795]
* Fixed a bug in fit_wcs_from_points that does not set the
default value of the cdelt of the returned WCS object. [#16027]
* Fixed a bug in DistortionLookupTable (which implements cpdis
and det2im projection corrections to a WCS) in which image
pixels received an incorrect distortion value, from a location
in the lookup table incorrectly offset by about 1 table pixel.
[#16163]
[#]# Other Changes and Additions
* Update minimum supported Python version to 3.10 [#15603]
* The minimum required NumPy version is now 1.23 and the minimum
required SciPy version is 1.8. [#15706]
* Fix loading parser tabs on pyc-only installations.
* Fix a bug in the wrappers for the lex and yacc wrappers that
are used for parsing Astropy units so that they work on
pyc-only installations.
* According to the Python module loading flow chart, when
evaluating import foo and foo.py is not found, Python then
reads foo.pyc.
* One can take advantage of this fact to strip source files and
leave only Python bytecode files for deployment
inspace-constrained execution environments such as AWS Lambda.
Astropy is now compatible with pyc-only deployments. [#16159]
* Change the default value of copy arguments in public APIs from
False to None if Numpy 2.0 or newer is installed. For details,
see the “Copy semantics” section on the What’s New page for
Astropy 6.1 . [#16181]
* Fri Mar 29 2024 Ben Greiner <[email protected]>
- Update to 6.0.1
[#]# Bug Fixes
[#]## astropy.coordinates
* Previously passing a SkyCoord instance to the
BaseCoordinateFrame separation() or separation_3d() methods
could produce wrong results, depending on what additional frame
attributes were defined on the SkyCoord, but now SkyCoord input
can be used safely. [#15659]
* Distance now accepts as parallax any angle-like value. This
includes types like Column which have a unit but are not
Quantity subclasses. [#15712]
* The new default for the class method SkyCoord.from_name() is to
look for coordinates first in SIMBAD, then in NED, and then in
VizieR, instead of having no specific order. [#16046]
[#]## astropy.io.ascii
* Reading of CDS header files with multi-line descriptions where
the continued line started with a number was broken. This is
now fixed. [#15617]
* Ensure that the names of mixin columns are properly propagated
as labels for the MRT format. [#15848]
* Fixed reading IPAC tables for long column type on some
platforms, e.g., Windows. [#15992]
[#]## astropy.io.fits
* Fix TDISP parsing for floating numbers. [#16007]
* Fix a crash when calling FITS writeto methods with stdout as
the output stream. [#16008]
* Fix TDISP parsing for floating numbers in formats ES / EN.
[#16015]
[#]## astropy.stats
* Fix a spurious warning when calling sigma_clipped_stats on a
MaskedColumn. [#15844]
[#]## astropy.table
* Fix a Table bug when setting items (via slice or index list) in
a bytes type MaskedColumn would cause the column mask to be set
to all False. A common way to trigger this bug was reading a
FITS file with masked string data and then sorting the table.
[#15669]
* Fix slicing logic for Row. Previously, slicing a
astropy.table.row.Row object would incorrectly return a column,
now it correctly returns a list of values from that row.
[#15733]
* Fix a ValueError raised by table.join when fed with large
tables. This would typically happen in situations when the
result joined table would be too large to fit in memory. In
those situations, the error message is now much more clearly
about the necessary memory size. [#15734]
* Fix an unintended exception being raised when attempting to
compare two unequal Table instances. [#15845]
* Ensure that if a Column is initialized with a Quantity it will
use by default a possible name defined on the quantity’s .info.
[#15848]
* The unit conversion convert_unit_to with MaskedColumn was
broken as it was storing the old unit in a dictionary attached
to underlying np.ma.MaskedArray. This fixes it by overwriting
the old unit after unit conversion. [#16118]
* astropy.table.vstack will no longer modify the input list even
when it contains non-Table objects like astropy.table.Row.
[#16130]
[#]## astropy.units
* Fix an issue with unicode string representations of units shown
as superscripts (like degree) when raised to some power. Like
for LaTeX representations, now the superscript unicode
character is replaced by the literal short name before adding
the power. [#15755]
* Fix a missing Sun unit in the list of VOUnits simple_units.
[#15832]
* Fix write/read roundtrips with empty Table dumped to ECSV.
[#15885]
* Fix a bug where LaTeX formatter would return empty strings for
unity (1) input. [#15923]
* Ensure powers of units are consistently as simple as possible.
So, an integer if possible, otherwise a float, or a fraction if
the float is really close to that. This also ensures the hash
of a unit is unique for any given unit (previously, the same
power could be represented as float, int or fraction, which
made the hash different). [#16058]
* Ensure that find_equivalent_units only returns actual units,
not units that raised to some power match the requested one.
With this fix, (u.m**-3).find_equivalent_units() properly finds
nothing, rather than all units of length. [#16127]
[#]## astropy.utils
* Fix a bug where astropy.utils.console.Spinner would leak
newlines for messages longer than terminal width. [#16040]
* Update report_diff_values so the diff no longer depends on the
console terminal size. [#16065]
* Fix support in Masked for generalized ufuncs with more than a
single core dimension (such as erfa.rxp). [#16120]
[#]## astropy.visualization
* Fix an edge case where quantity_support would produce duplicate
tick labels for small data ranges. [#15841]
[#]## astropy.wcs
* Updated bundled WCSLIB version to 8.2.2. This update fixes
character buffer overflows in the comment string for the
longitude and latitude axes triggered by some projections in
wcshdo(), and also the formatting for generic coordinate
systems. For a full list of changes - see
http://www.atnf.csiro.au/people/mcalabre/WCS/CHANGES or
astropy/cextern/wcslib/CHANGES [#15795]
* Fixed a bug in fit_wcs_from_points that does not set the
default value of the cdelt of the returned WCS object. [#16027]
[#]# Other Changes and Additions
* Given the potential breaking changes with the upcoming Numpy
2.0 release, this release pins Numpy<2.0 and support for Numpy
2.0 will be added in the v6.1.0 release.
* Tue Mar 19 2024 Ben Greiner <[email protected]>
- Enable SLE15 python module for python311
* Old version <=5.3.2 would be vulnerable boo#1221661
CVE-2023-41334
* Thu Mar 07 2024 Ben Greiner <[email protected]>
- Don't test with python39-ipython: not available anymore
* Sat Dec 09 2023 Ben Greiner <[email protected]>
- Update to 6.0.0
[#]# New Features
[#]## astropy.config
* The new ConfigNamespace.help() method provides a convenient way
to get information about configuration items. [#13499]
[#]## astropy.coordinates
* Support has been added to create geodetic representations not
just for existing ellipsoids from ERFA, but also with
explicitly provided values, by defining a subclass of
BaseGeodeticRepresentation with the equatorial radius and
flattening assigned to _equatorial_radius and _flattening
attributes. [#14763]
* Add BaseBodycentricRepresentation, a new spheroidal
representation for bodycentric latitudes and longitudes.
[#14851]
* Support Numpy broadcasting over frame data and attributes.
[#15121]
[#]## astropy.cosmology
* Registered a latex writer for exporting a Cosmology object to a
LaTex table. [#14701]
* Added argument rename to Cosmology’s I/O, allowing for input
and output symbols to be renamed. [#14780]
* All non-abstract Cosmology subclasses are now automatically
registered to work with Astropy’s YAML serialization. [#14979]
* Cosmology I/O now auto-identifies the ‘.tex’ suffix with the
‘ascii.latex’ format. [#15088]
* The Cosmology class now has a new property to access the
parameters of the cosmology: .parameters. This property return
a read-only dictionary of all the non-derived parameter values
on the cosmology object. When accessed from the class (not an
instance) the dictionary contains Parameter instances, not the
values. [#15168]
* The field default has been added to Parameter. This can be used
to introspect the default value of a parameter on a cosmology
class e.g. LambdaCDM.H0.default. [#15400]
[#]## astropy.io.fits
* Add new option decompress_in_memory to fits.open, to decompress
the whole file in memory at once, instead of decompressing the
file progressively as data is needed. Default behavior is
better for memory usage but sometimes slow, especially for
files with many small HDUs. [#15501]
[#]## astropy.io.votable
* Add support for Parquet serialization of VOTables. Writing of
this serialization is available with using the new
'votable.parquet' format. [#15281]
* Added MIVOT feature through the MivotBlock class that allows
model annotations reading and writing in VOTable. [#15390]
[#]## astropy.modeling
* Added a GeneralSersic2D model that can have “boxy” or “disky”
isophotes. [#15545]
[#]## astropy.nddata
* A more flexible and/or compact string representation is now
available for NDData objects which visually indicates masked
entries, and provides for better for dask array support.
[#14438]
[#]## astropy.table
* The new Row.get() method, analogous to dict.get(), returns the
value of the specified column from the row if the column
present, otherwise it returns a fallback value, which by
default is None. [#14878]
[#]## astropy.time
* Masked Time instances now use astropy’s own Masked class
internally. This means that Masked input is now properly
recognized, and that masks get propagated also to Quantity
output (such as from a TimeDelta converted to a unit of time),
creating MaskedQuantity instances. [#15231]
* Added a TimeDelta format quantity_str that represents the time
delta as a string with one or more Quantity components. This
format provides a human-readable multi-scale string
representation of a time delta. The default output sub-format
is not considered stable in this release, please see
astropy/astropy#15485 for more information. [#15264]
[#]## astropy.uncertainty
* Uncertainty Distribution now support structured data types, and
as a result it now works also with EarthLocation. [#15304]
* Uncertainty Distribution can now be used inside
representations, which also allows basic support in SkyCoord.
While most calculations work, there are remaining issues. For
instance, the repr does not show that the coordinates are
distributions. [#15395]
[#]## astropy.units
* Add support for gc2gde and gd2gce erfa functions to allow
geodetic representations using equatorial radius and
flattening. [#14729]
[#]## astropy.utils
* The astropy.utils.metadata.MetaData default dictionary can now
be set with the default_factory keyword argument. [#15265]
* astropy.utils.decorators.deprecated now adds the __deprecated__
attribute to the objects it wraps, following the practice in
https://peps.python.org/pep-0702/. [#15310]
[#]## astropy.visualization
* Add WCSAxes.text_coord method to print text using SkyCoord
objects parallel to plotting data points with
WCSAxes.plot_coord. [#14661]
[#]## astropy.wcs
* Support WCS descriptions of basic planetary coordinate frames.
[#14820]
* Updated bundled WCSLIB version to 8.1. This update adds support
planetary keywords A_RADIUS, B_RADIUS, C_RADIUS, BLON_OBS,
BLAT_OBS, and BDIS_OBS in auxprm and adds wcsprm::time to the
wcsprm struct to record the TIME axis. This update also
includes several bug fixes. For a full list of changes - see
http://www.atnf.csiro.au/people/mcalabre/WCS/CHANGES [#15035]
[#]# API Changes
[#]## astropy.config
* Removed deprecated ConfigurationMissingWarning class and
update_default_config function; There are no replacements as
they should no be used anymore. [#15466]
[#]## astropy.convolution
* Invalid kernel arithmetic operations now raise a
KernelArithmeticError instead of a bare Exception. [#14728]
* Added base KernelError error class and removed
DiscretizationError error class (a ValueError will be raised
instead). [#14732]
* discretize_model will now raise a ValueError if
mode='oversample' and factor does not have an integer value.
[#14794]
[#]## astropy.coordinates
* Removed deprecated angle parsing and formatting utilities from
angle_utilities. Use the functions from angle_formats instead.
[#14675]
* The deprecated functionality of initializing Angle or Longitude
from a tuple is no longer supported. [#15205]
* Angle-related classes and functions have been moved within
astropy.coordinates. There is no change to public API as
everything moved should still be imported from
astropy.coordinates, not a sub-module. If you are using private
API, try importing from astropy.coordinates instead. If you
need something that has been moved and is not available in
astropy.coordinates, please open an issue on the Astropy issue
tracker. [#15220]
* It is no longer possible to pass frame classes to the
transform_to() method of a low-level coordinate-frame class. It
is still possible to pass frame instances. The transform_to()
method of the high-level SkyCoord class is unaffected. [#15500]
[#]## astropy.cosmology
* Removed support of importing private constants and functions
from astropy.cosmology.flrw. [#14672]
* Removed deprecated Cosmology Parameter argument fmt. [#14673]
* Removed deprecated vectorize_if_needed and inf_like from
cosmology.utils. [#14677]
* Removed deprecated import paths from astropy.cosmology.core.
[#14782]
* Cosmology Parameter is now a dataclass, and can work with all
of Python’s dataclasses machinery, like field introspection and
type conversion. [#14874]
* A new property – scale_factor0 – has been added to Cosmology
objects. This is the scale factor at redshift 0, and is defined
to be 1.0. [#14931]
* Added registration label ascii.latex to Cosmology IO. [#14938]
* The private module astropy.cosmology.utils has been deprecated.
[#14980]
* Removed deprecated get_cosmology_from_string class method in
default_cosmology; use get instead. [#15467]
[#]## astropy.io.ascii
* Several arguments in functions within astropy.io.ascii have
been deprecated and are either renamed or scheduled to be
removed.
* read(): - Reader will be removed. Instead supply the equivalent
format argument. - Inputter has been renamed to inputter_cls. -
Outputter has been renamed to outputter_cls.
* get_reader(): - Reader has been renamed to reader_cls. -
Inputter has been renamed to inputter_cls. - Outputter has been
renamed to outputter_cls.
* write(): - Writer will be removed. Instead supply the
equivalent format argument.
* get_writer(): - Writer has been renamed to writer_cls. [#14914]
* Removed deprecated astropy.io.ascii.tests.common.raises test
helper; use pytest.raises instead. [#15470]
[#]## astropy.io.fits
* Deprecate _ExtensionHDU and _NonstandardExtHDU (use
ExtensionHDU or NonstandardExtHDU instead). [#15396]
* Remove special handling of TCTYP TCUNI TCRPX TCRVL TCDLT TRPOS
(#7157). [#15396]
* Rename and deprecate TableHDU.update to TableHDU.update_header,
for consistency with ImageHDU. [#15396]
[#]## astropy.io.misc
* Removed deprecated astropy.io.misc.asdf subpackage. Use
asdf-astropy package instead. [#14668]
* fnunpickle and fnpickle are deprecated because they are not
used anywhere within astropy. If you must, use the module from
Python standard library but be advised that pickle is insecure
so you should only unpickle data that you trust. [#15418]
[#]## astropy.io.votable
* Removed deprecated pedantic option from the
astropy.io.votable.table.parse() function and the corresponding
configuration setting. Use the verify option instead. [#14669]
* Class astropy.io.votable.tree.Table has been renamed to
TableElement to avoid sharing the name with
astropy.table.Table. [#15372]
* Fully removed support for version = ‘1.0’ on
VOTableFile__init__() and changed its tests to check correctly.
It was raising a DeprecationWarning and now is raising a
ValueError. [#15490]
[#]## astropy.modeling
* Removed the AliasDict class from modeling.utils. [#12943]
* Creating a model instance with parameters that have
incompatible shapes will now raise a ValueError rather than an
IncompatibleShapeError. [#15209]
* Removal of deprecated code _model_to_fit_params and
_fitter_to_model_params from fitting.py. [#15461]
[#]## astropy.stats
* The BoxLeastSquares, BoxLeastSquaresResults and LombScargle
classes are not available from astropy.stats anymore, they are
now available only from astropy.timeseries. [#15530]
[#]## astropy.tests
* Removed deprecated deprecation, warning, and exception handling
functionality provided by astropy.tests.helper. [#14670]
* astropy.tests.command.FixRemoteDataOption and
astropy.tests.command.AstropyTest are deprecated. They are no
longer necessary after sunsetting astropy-helpers. [#15204]
[#]## astropy.time
* Time has switched to use Masked arrays internally, instead of
indicating masked values using NaN in the internal jd2
attribute. As a result, any output from instances, such as one
gets with, say, the .isot format, will also use Masked by
default.
* For backwards compatibility, a new configuration item,
astropy.time.conf.masked_array_type is introduced which is set
to “astropy” by default (which indicates one wants to use
Masked), but can also be set to “numpy”, in which case
numpy.ma.MaskedArray will be used where possible (essentially,
for all but Quantity). [#15231]
* Changed the TimeDelta init signature to be consistent with that
of Time. Previously the argument order was val, val2, format,
scale, copy. Now the order is val, val2, format, scale, *,
precision, in_subfmt, out_subfmt, copy, where the arguments
after the * must be specified by keyword. [#15264]
[#]## astropy.timeseries
* Removed deprecated midpoint_epoch in fold function; use
epoch_time instead. [#15462]
[#]## astropy.uncertainty
* The .dtype attribute exposed by Distribution is now that of the
samples, rather than one that has a “samples” entry. This makes
quantities with structured data types and units easier to
support, and generally makes the Distribution appear more
similar to regular arrays. It should have little effect on
code. For instance, distribution["samples"] still will return
the actual distribution.
* As a consequence of this refactoring, most arrays that are not
C-contiguous can now be viewed and will thus not be copied on
input any more. The only exceptions are arrays for which the
strides are negative.
* Note that the true data type is considered an implementation
detail. But for reference, it now is a structured data type
with a single field, “samples”, which itself is an array of
“sample” fields, which contain the actual data. [#15304]
[#]## astropy.units
* Like np.ndarray, under numpy 2.0 Quantity and all its
subclasses (Angle, Masked, etc.) will no longer support the
.ptp() method. Use np.ptp(...) instead.
* Similarly, support for the much less frequently used
.newbyteorder() and .itemset() methods has been removed.
[#15378]
* The following deprecated functionality has been removed:
- littleh unit and with_H0 equivalency. They are still
available from cosmology.units.
- brightness_temperature equivalency no longer automatically
swaps the order of its arguments if it does not match the
expectation.
- PhysicalType no longer supports str methods and attributes.
[#15514]
[#]## astropy.utils
* Removed deprecated OrderedDescriptor,
OrderedDescriptorContainer, and set_locale in
astropy.utils.misc. [#14679]
* is_path_hidden() and walk_skip_hidden() are deprecated.
[#14759]
* The structure of utils.metadata has been refactored, but all
the available functions and classes are still present and
should be imported as before. [#15166]
* The astropy.utils.metadata.MetaData class, which is used
throughout astropy to carry metadata on tables, columns, etc.,
can now also be used on dataclasses.
* When accessing the meta attribute on a class
astropy.utils.metadata.MetaData now returns None instead of
itself. [#15237]
* The astropy.utils.metadata.MetaData class, which is used
throughout astropy to carry metadata on tables, columns, etc.,
can now also be used on frozen dataclasses. [#15404]
* Removed deprecated version_path in minversion function; it is
no longer used. [#15468]
[#]## astropy.visualization
* The bboxes, ticklabels_bbox, and tick_out_size arguments to
astropy.visualization.wcaxes.ticklabels.TickLabels.draw() now
have no effect and are deprecated. This is to allow rasterized
ticks to be drawn correctly on WCSAxes. [#14760]
* It is now not possible to pass any keyword arguments to
astropy.visualization.wcsaxes.WCSAxes.draw(). Previously
passing any keyword arguments would have errored anyway, as
matplotlib.axes.Axes.draw() does not accept keyword arguments.
[#14772]
* Deprecated the exp attribute in the LogStretch,
InvertedLogStretch, PowerDistStretch, and
InvertedPowerDistStretch stretch classes, and the power
attribute in the PowerStretch. Instead, use the a attribute,
which matches the input keyword. [#15538]
* Removed the maximum value of the a parameter in the
AsinhStretch and SinhStretch stretch classes. [#15539]
[#]## astropy.wcs
* Removed deprecated accuracy from all_world2pix method in WCS;
use tolerance instead. [#15464]
* NoConvergence no longer accepts arbitrary keyword arguments.
[#15504]
[#]# Bug Fixes
[#]## astropy.coordinates
* Fixed minor bug when getting solar system positions of objects
from Type 3 SPICE kernel files. [#15612]
[#]## astropy.cosmology
* The exponent in w0wzCDM.de_density_scale has been corrected to
3, from -3. This correction has also been made to the scalar
inv_efunc cpython functions. [#14991]
* pandas.Series are now uniformly converted to their underlying
data type when given as an argument to a Cosmology method.
[#15600]
[#]## astropy.io.fits
* Reading a table from FITS now respects the TNULL property of a
column, passing it into the column’s fill_value. [#14723]
* Fix crash when a PrimaryHDU has a GROUPS keyword with a
non-boolean value (i.e. not a random-groups HDU). [#14998]
* Fixed a bug that caused Cutout2D to not work correctly with
CompImageHDU.section [#14999]
* Fixed a bug that caused compressed images with TFORM missing
the optional ‘1’ prefix to not be readable. [#15001]
* Ensure that tables written to FITS with both masked and
unmasked columns roundtrip properly (previously, all integer
columns would become masked if any column was masked). [#15473]
* Fix segfault with error report in tile decompression. [#15489]
[#]## astropy.io.votable
* Output of repr for VOTable instance now clearly shows it is a
VOTable and not generic astropy Table. [#14702]
[#]## astropy.modeling
* All models can be pickled now. [#14902]
[#]## astropy.nddata
* Restore bitmask propagation behavior in NDData.mask, plus a fix
for arithmetic between masked and unmasked NDData objects.
[#14995]
[#]## astropy.table
* Table.as_array now respects the fill_value property of masked
columns. [#14723]
* Fix a bug where table indexes were not using a stable sort
order. This was causing the order of rows within groups to not
match the original table order when an indexed table was
grouped. [#14907]
* Fixed issue #14964 that when grouping a Table on a mixin column
such as Quantity or Time, the grouped table keys did not
reflect the original column values. For Quantity this meant
that the key values were pure float values without the unit,
while for Time the key values were the pair of jd1 and jd2
float values. [#14966]
[#]## astropy.time
* Ensure that the Time caches of formats and scales do not get
out of sync with the actual data, even if another instance,
holding a view of the data is written to. E.g., if one does t01
= t[:2], and sets t[0] after, it is now guaranteed that
t01.value will correctly reflect that change in value. [#15453]
[#]## astropy.units
* In VOunits, “pix”, “au”, “a”, and “ct” are removed from the
list of deprecated units. [#14885]
[#]## astropy.utils
* Ufuncs with more than 2 operands (such as erfa.dtf2d) now work
also if all inputs are scalars and more than two inputs have
masks. [#15450]
* Ensured that str(masked_array) looks like str(unmasked_array)
also for array scalars. Thus, like regular array scalars, the
precision is ignored for float, and strings do not include
extra quoting. [#15451]
[#]## astropy.visualization
* The location of ticklabels on a WCSAxes is now correctly
calculated when the figure is rasterized. [#14760]
* Fixed a bug where a ValueError would be raised in the
AsinhStretch and SinhStretch classes for valid a parameter
values. [#15539]
[#]## astropy.wcs
* wcs.validate(filename) now properly closes the file handler.
[#15054]
* Fix a regression in custom WCS mapping due to the recent
introduction of Solar System frames. [#15630]
[#]# Other Changes and Additions
* The minimum supported version of NumPy is now 1.22. [#15006]
* Moved International Earth Rotation and Reference Systems (IERS)
and Leap Second files out into standalone astropy-iers-data
package, maintaining full backward-compatibility in the
astropy.utils.iers API. Deprecation warnings may be issued when
certain files are accessed directly. [#14819]
* Switch from using setup.cfg for project configuration to using
pyproject.toml. [#15247]
* Update bundled expat to 2.5.0. [#15585]
- Drop astropy-pr15479-pvstar.patch
* Wed Nov 08 2023 Ben Greiner <[email protected]>
- Add astropy-pr15479-pvstar.patch
* PR gh#astropy/astropy#15479 backports gh#astropy/astropy#15476
* Issue at gh#astropy/astropy#15537
* Fri Oct 06 2023 Ben Greiner <[email protected]>
- Update to 5.3.4
[#]# Bug Fixes
[#]## astropy.io.misc
* Updated ``astropy.io.misc.yaml`` so ``dump()` with a numpy
object array or ``load()`` with YAML representing a Numpy
object array both raise ``TypeError``. This prevents problems
like a segmentation fault. [#15373]
[#]## astropy.io.votable
* Fixed a bug in ``convert_to_writable_filelike`` where
``GzipFile`` was not closed properly. [#15359]
[#]## astropy.units
* In VOUnit, the spaces around the slash were removed in the
formatting of fractions, and fractional powers now also use the
"**" operator. [#15282]
* We now ensure that the unit ``u.cgs.cm`` is just an alias of
``u.si.cm``, instead of a redefinition. This ensures that
``u.Unit("cm") / u.cm`` will reliably cancel to dimensionless
(instead of some "cm / cm"). [#15368]
[#]## astropy.utils
* For ``Masked``, ``np.ptp`` and the ``.ptp()`` method now
properly account for the mask, ensuring the result is identical
to subtracting the maximum and minimum (with the same
arguments). [#15380]
[#]# Other Changes and Additions
* Compatibility with Python 3.12. [#14784]
* Replaced the URL of ``IETF_LEAP_SECOND_URL`` because the
original is now defunct and IETF now defers to IANA for such
look-up. [#15421]
* Thu Sep 14 2023 Ben Greiner <[email protected]>
- Update to 5.3.3
[#]# Bug Fixes
[#]## astropy.coordinates
* TransformGraph.to_dot_graph() now throws an exception for
invalid savelayout.
[#]## astropy.cosmology
* The exponent of w0wzCDM functions in inv_efunc has been
corrected to 3, from -3. [#15224]
[#]## astropy.modeling
* Astropy modeling can filter non-finite data values using the
filter_non_finite keyword argument in a fitter call. Now when
filter_non_finite is True, non-finite weights will also be
filtered to prevent crashes in LevMarLSQFitter. [#15215]
[#]## astropy.units
* Fixed astropy.units.Quantity’s implementation of
numpy.nanmedian(), where for Numpy >= 1.25 an exception was
raised for some array shapes and axis combinations. [#15228]
[#]# Other Changes and Additions
* v5.3.x will not support NumPy 2.0 or later. [#15234]
- Restrain to Cython < 3 -- gh#astropy/astropy#15315
* Tue Aug 22 2023 Ben Greiner <[email protected]>
- Update to 5.3.2
[#]## astropy.coordinates
* Fixed import when called with Python -OO flag. [#15037]
[#]## astropy.nddata
* Fix for collapse operations on NDData without masks or units.
[#15082]
[#]## astropy.units
* Modified the implementation of np.power() for instances of
Quantity to allow any array as the second operand if all its
elements have the same value. [#15101]
* Sun Jul 16 2023 Dirk Müller <[email protected]>
- update to 5.3.1:
* The exponent in ``wowzCDM.de_density_scale`` has been
corrected to 3, from -3.
* Fix crash when a PrimaryHDU has a GROUPS keyword with a non-
boolean value (i.e. not a random-groups HDU).
* Fixed a bug that caused ``Cutout2D`` to not work correctly
with ``CompImageHDU.section``
* Fixed a bug that caused compressed images with TFORM missing
the optional '1' prefix to not be readable. [#15001]
* Restore bitmask propagation behavior in ``NDData.mask``, plus
a fix for arithmetic between masked and unmasked ``NDData``
objects.
* Fix a bug where table indexes were not using a stable sort
order. This was causing the order of rows within groups to
not match the original table order when an indexed table
was grouped. [#14907]
* In VOunits, "pix", "au", "a", and "ct" are removed from the
list of deprecated units. [#14885]
* Sat Jul 01 2023 Ben Greiner <[email protected]>
- Update to 5.3
* New flat astropy.cosmology classes
* New union operators for Table
* Efficient data access for compressed FITS files
* Added support for NOCOMPRESS for compressed FITS files
* New fraction option for representing units as strings
* Change in order in unit string representations
* Support for collapse operations on arbitrary axes in nddata
* Refresh cached observatory site registry for EarthLocation
methods
* Support for collapse operations on arbitrary axes in nddata
* New LombScargleMultiband class for multiband datasets
- Remove unbundling of cfitsio -- gh#astropy/astropy#14311
* Wed Apr 26 2023 Ben Greiner <[email protected]>
- Update to 5.2.2
[#]# Bug Fixes
[#]## astropy.io.ascii
* CDS and MRT tables with units that contain with multiple
divisions, such as km/s/Mpc now parse correctly as being equal
to km/(s.Mpc). [#14369]
[#]## astropy.io.fits
* Fix FITSDiff when table contains a VLA column with the Q type.
[#14539]
[#]## astropy.table
* Fix a bug when creating a QTable when a Quantity input column
is present and the units argument modifies the unit of that
column. This now works as expected where previously this caused
an exception. [#14357]
[#]## astropy.units
* CDS units with multiple divisions, such as km/s/Mpc now parse
correctly as being equal to km/(s.Mpc). [#14369]
[#]## astropy.wcs
* Fixed a bug that caused subclasses of BaseHighLevelWCS and
HighLevelWCSMixin to not work correctly under certain
conditions if they did not have world_n_dim and pixel_n_dim
defined on them. [#14495]
* Sun Feb 19 2023 Ben Greiner <[email protected]>
- Don't test with skyfield on python311: gh#brandon-rhodes/assay#15
* Fri Jan 13 2023 Ben Greiner <[email protected]>
- Update to 5.2.1
[#]# Bug Fixes
[#]## astropy.coordinates
* Fix to ITRS frame earth_location attribute to give the correct
result for a topocentric frame. [#14180]
[#]## astropy.cosmology
* Bounds are no longer passed to the scipy minimizer for methods
Brent and Golden. The scipy minimizer never used the bounds but
silently accepted them. In scipy v1.11.0.dev0+ an error is
raised, so we now pass None as the bounds to the minimizer.
Users should not be affected by this change. [#14232]
[#]## astropy.io.fits
* Tables with multidimensional variable length array can now be
properly read and written. [#13417]
[#]## astropy.units
* Modified the behavior of numpy.histogram(),
numpy.histogram_bin_edges(), numpy.histogram2d(), and
numpy.histogramdd() so that the range argument must a
compatible instance of astropy.units.Quantity if the other
arguments are instances of astropy.units.Quantity. [#14213]
[#]## astropy.visualization
* Improved the performance of drawing WCSAxes grids by skipping
some unnecessary computations. [#14164]
* Fixed WCSAxes sometimes triggering a NumPy RuntimeWarning when
determining the coordinate range of the axes. [#14211]
[#]# Other Changes and Additions
* Fix compatibility with Numpy 1.24. [#14193]
- Drop astropy-pr14194-numpy1.24.patch
* Wed Dec 21 2022 Ben Greiner <[email protected]>
- Update to 5.2
* Astropy 5.2 is a major release that adds significant new
functionality since the 5.1 release.
* In particular, this release includes:
* Quantity data types
* Updates to astropy.cosmology
* Topocentric ITRS Frame
* Enhanced Fixed Width ASCII Tables
* Accessing cloud-hosted FITS files
* Drawing the instrument beam and a physical scale bar on
celestial images
* Interior ticks and tick labels
* Support for tilde-prefixed paths
* CCDData PSF Image representation
* In addition to these major changes, Astropy 5.2 includes a
large number of smaller improvements and bug fixes.
- Move to PEP517 build
- Revert rpmlintrc: the whitelist error category has been removed
from rpmlint
- Add astropy-pr14194-numpy1.24.patch gh#astropy/astropy#14194
* Mon Nov 21 2022 Ben Greiner <[email protected]>
- Whitelist stupid rpmlint error
* https://docs.astropy.org/en/latest/development/testguide.html#astropy-test
* gh#rpm-software-management/rpmlint#965
* Sun Oct 23 2022 Ben Greiner <[email protected]>
- Update to 5.1.1
[#] API Changes
[#]# astropy.wcs
* The pixel argument to
astropy.visualization.wcsaxes.ticklabels.TickLabels.add no
longer does anything, is deprecated, and will be removed in a
future astropy version. It has been replaced by a new required
data argument, which should be used to specify the data
coordinates of the tick label being added.
* This changes has been made because it is (in general) not
possible to correctly calculate pixel coordinates before
Matplotlib is drawing a figure. [#12630]
[#] Bug Fixes
[#]# astropy.coordinates
* Fixed a bug that prevented SkyOffsetFrame instances to be
pickled by adding a custom __reduce__ method to the class (see
issue #9249). [#13305]
* Fixed the check for invalid Latitude values for float32 values.
Latitude now accepts the float32 value of pi/2, which was
rejected before because a comparison was made using the
slightly smaller float64 representation. See issue #13708.
[#13745]
[#]# astropy.io.ascii
* Fixed confusing chained exception messages of read() function
when it fails. [#13170]
* When writing out a :class:`~astropy.table.Table` to HTML
format, the formats keyword argument to the
:meth:`~astropy.table.Table.write` method will now be applied.
[#13453]
[#]# astropy.io.fits
* heapsize is now checked for VLA tables. An error is thrown
whether P format is used but the heap size is bigger than what
can be indexed with a 32 bit signed int. [#13429]
* Fix parsing of ascii TFORM when precision is missing. [#13520]
* A compressed image HDU created from the header of a PRIMARY
HDU, now correctly updates 'XTENSION' and 'SIMPLE' keywords.
[#13557]
* Empty variable-length arrays are now properly handled when
pathological combinations of heapoffset and heapsize are
encountered. [#13621]
* PCOUNT and GCOUNT keywords are now removed from an uncompressed
Primary header, for compliancy with fitsverify behavior.
[#13753]
[#]# astropy.modeling
* Bugfix for using MagUnit units on model parameters. [#13158]
* Fix bug in using non-linear fitters to fit 0-degree polynomials
using weights. [#13628]
[#]# astropy.table
* Fix a problem where accessing one field of a structured column
returned a Column with the same info as the original column.
This resulted in unintuitive behavior in general and an
exception if the format for the column was set. [#13269]
* Tables with columns with structured data can now be properly
stacked and joined. [#13306]
* Update jQuery to 3.6.0, to pick up security fixes. [#13438]
* Fix a Python 3.11 compatibility issue. Ensure that when
removing a table column that the pprint_include_names or
pprint_exclude_names attributes get updated correctly. [#13639]
* When using add_columns with same indexes in indexes option or
without specifying the option, the order of the new columns
will now be kept. [#13783]
* Fix a bug when printing or getting the representation of a
multidimensional table column that has a zero dimension.
[#13838]
* Ensure that mixin columns and their info are not shared between
tables even when their underlying data is shared with
copy=False. [#13842]
[#]# astropy.time
* Fix Time.insert() on times which have their out_subfmt set.
[#12732]
* Prevent Time() from being initialized with an invalid precision
leading to incorrect results when representing the time as a
string. [#13068]
* Fix a bug in Time where a date string like "2022-08-01.123" was
being parsed as an ISO-format time "2022-08-01 00:00:00.123".
The fractional part at the end of the string was being taken as
seconds. Now this raises an exception because the string is not
in ISO format. [#13731]
[#]# astropy.units
* Significantly improved the performance of parsing composite
units with the FITS format, by ensuring the detailed_exception
argument is properly passed on and thus used. [#12699]
* Ensure that np.concatenate on quantities can take a dtype
argument (added in numpy 1.20). [#13323]
* Ensure that the units of any initial argument to reductions
such as np.add.reduce (which underlies np.sum) are properly
taken into account. [#13340]
[#]# astropy.utils
* Ensure that np.concatenate on masked data can take a dtype
argument (added in numpy 1.20). [#13323]
* Fix error when suppressing download progress bar while using
non-default sys.stdout stream. [#13352]
* Ensure str and repr work properly for Masked versions of
structured subarrays. [#13404]
* If an attribute is created using deprecated_attribute() with
the alternative argument then getting or setting the value of
the deprecated attribute now accesses its replacement. [#13824]
[#]# astropy.visualization
* Fixed calling .tight_layout() on a WCSAxes. [#12418]
[#]# astropy.wcs
* WCS.pixel_to_world now creates an EarthLocation object using
MJD-AVG if present before falling back to the old behaviour of
using MJD-OBS. [#12598]
* The locations of WCSAxes ticks and tick-labels are now
correctly calculated when the DPI of a figure changes between a
WCSAxes being created and the figure being drawn, or when a
rasterized artist is added to the WCSAxes. [#12630]
* Fix a bug where SlicedLowLevelWCS.world_to_pixel_values would
break when the result of the transform is dependent on the
coordinate of a sliced out pixel. [#13579]
* Updated bundled WCSLIB version to 7.12. This update includes
bug fixes to wcssub() in how it handles temporal axes with -TAB
and fixes handling of status returns from linp2x() and linx2p()
relating to distortion functions, in particular affecting TPV
distortions - see #13509. For a full list of changes - see
http://www.atnf.csiro.au/people/mcalabre/WCS/CHANGES or
astropy/cextern/wcslib/CHANGES. [#13635]
* Fixed WCS validation not working properly if HDUList is needed
for multi-extension FITS file. [#13668]
* Mon Jun 20 2022 Ben Greiner <[email protected]>
- Skip two tests because of hypothesis -- gh#astropy/astropy#13275
* Tue May 31 2022 Ben Greiner <[email protected]>
- Skip two test categories segfaulting: gh#astropy/astropy#13286
* Thu May 26 2022 Ben Greiner <[email protected]>
- Update to 5.1
* Astropy 5.1 is a major release that adds significant new
functionality since the 5.0 LTS release.
* In particular, this release includes:
- Updates to cosmology
- doppler_redshift() equivalency
- Specifying data types when reading ASCII tables
- Structured Columns
- New model fitters have been added
- Allow time conversions without predictive Earth rotation data
(IERS-A)
- Uncertainty classes can be transformed into each other
- Schechter1D Model
* In addition to these major changes, Astropy v5.1 includes a
large number of smaller improvements and bug fixes, which are
described in the Full Changelog.
* Sat Apr 23 2022 Ben Greiner <[email protected]>
- Enable tests requiring Pytest 7
* Fri Apr 01 2022 Ben Greiner <[email protected]>
- Update to 5.0.4
[#] Bug Fixes
[#]# astropy.modeling
* Fixed the Gaussian2D bounding_box when theta is an angular
Quantity. [#13021]
[#]# astropy.utils
* Reverted astropy.utils.iers.iers.IERS_A_URL to
maia.usno.navy.mil domain instead of NASA FTP to work around
server issues. [#13004]
[#] Other Changes and Additions
* Updated bundled WCSLIB to version 7.9 with several bugfixes and
added support for time coordinate axes in wcsset() and
wcssub(). The four-digit type code for the time axis will have
the first digit set to 4, i.e., four digit code will be 4xxx
where x is a digit 0-9. For a full list of bug fixes see
https://www.atnf.csiro.au/people/mcalabre/WCS/CHANGES [#12994]
(when building --without system_wcslib)
- Release 5.0.3
[#] Bug Fixes
[#]# astropy.convolution
* Bugfix in astropy.convolution.utils.discretize_model which
allows the function to handle a CompoundModel. Before this fix,
discretize_model was confusing CompoundModel with a callable
function. [#12959]
[#]# astropy.io.fits
* Fix write and read FITS tables with multidimensional items,
using from_columns without previousely defined ColDefs
structure. [#12863]
[#]# astropy.io.votable
* Fix VOTable linting to avoid use of shell option. [#12985]
astropy.utils
* Fix XML linting to avoid use of shell option. [#12985]
[#] Other Changes and Additions
* Updated the bundled CFITSIO library to 4.1.0. [#12967]
(when building --without system_cfitsio)
* Sun Mar 13 2022 Ben Greiner <[email protected]>
- Update to 5.0.2
astropy.io.ascii
* Bugfix to add backwards compatibility for reading ECSV version
0.9 files with non-standard column datatypes (such as `object`,
`str`, `datetime64`, etc.), which would raise a ValueError in
ECSV version 1.0. [#12880]
* astropy.io.misc
* Bugfix for `units_mapping` schema's property name conflicts.
Changes:
- `inputs` to `unit_inputs`
- `outputs` to `unit_outputs` [#12800]
astropy.io.votable
* Fixed a bug where `astropy.io.votable.validate` was printing
output to `sys.stdout` when the `output` paramter was set to
`None`. `validate` now returns a string when `output` is set to
`None`, as documented. [#12604]
astropy.modeling
* Fix handling of units on `scale` parameter in BlackBody model.
[#12318]
* Indexing on models can now be used with all types of integers
(like `numpy.int64`) instead of just `int`. [#12561]
* Fix computation of the separability of a `CompoundModel` where
another `CompoundModel` is on the right hand side of the `&`
operator. [#12907]
* Provide a hook (`Model._calculate_separability_matrix`) to
allow subclasses of `Model` to define how to compute their
separability matrix. [#12900]
astropy.stats
* Fixed a bug in which running
`kuiper_false_positive_probability(D,N)` on distributions with
many data points could produce NaN values for the false
positive probability of the Kuiper statistic. [#12896]
astropy.wcs
* Fixed a bug due to which `naxis`, `pixel_shape`, and
`pixel_bounds` attributes of `astropy.wcs.WCS` were not
restored when an `astropy.wcs.WCS` object was unpickled. This
fix also eliminates `FITSFixedWarning` warning issued during
unpiclikng of the WCS objects related to the number of axes.
This fix also eliminates errors when unpickling WCS objects
originally created using non-default values for `key`,
`colsel`, and `keysel` parameters. [#12844]
* Fri Jan 28 2022 Ben Greiner <[email protected]>
- Update to 5.0.1
astropy.coordinates
* Trying to create an instance of astropy.coordinates.Distance by
providing both z and parallax now raises the expected
ValueError. [#12531]
* Fixed a bug where changing the wrap angle of the longitude
component of a representation could raise a warning or error in
certain situations. [#12556]
* astropy.coordinates.Distance constructor no longer ignores the
unit keyword when parallax is provided. [#12569]
astropy.cosmology
* astropy.cosmology.utils.aszarr can now convert Column objects.
[#12525]
* Reading a cosmology from an ECSV will load redshift and Hubble
parameter units from the cosmology units module. [#12636]
astropy.io.fits
* Fix formatting issue in _dump_coldefs and add tests for
tabledump and tableload convenience functions. [#12526]
astropy.io.misc
* YAML can now also represent quantities and arrays with
structured dtype, as well as structured scalars based on
np.void. [#12509]
astropy.modeling
* Fixes error when fitting multiplication or division based
compound models where the sub-models have different output
units. [#12475]
* Bugfix for incorrectly initialized and filled parameters data
for Spline1D model. [#12523]
* Bugfix for keyerror thrown by Model.input_units_equivalencies
when used on fix_inputs models which have no set unit
equivalencies. [#12597]
astropy.table
* astropy.table.Table.keep_columns() and
astropy.table.Table.remove_columns() now work with generators
of column names. [#12529]
* Avoid duplicate storage of info in serialized columns if the
column used to serialize already can hold that information.
[#12607] astropy.timeseries
* Fixed edge case bugs which emerged when using
aggregate_downsample with custom bins. [#12527]
astropy.units
* Structured units can be serialized to/from yaml. [#12492]
* Fix bad typing problems by removing interaction with
NDArray.__class_getitem__. [#12511]
* Ensure that Quantity.to_string(format='latex') properly
typesets exponents also when
u.quantity.conf.latex_array_threshold = -1 (i.e., when the
threshold is taken from numpy). [#12573]
* Structured units can now be copied with copy.copy and
copy.deepcopy and also pickled and unpicked also for protocol
>= 2. This does not work for big-endian architecture with older
numpy<1.21.1. [#12583]
astropy.utils
* Ensure that a Masked instance can be used to initialize (or
viewed as) a numpy.ma.Maskedarray. [#12482]
* Ensure Masked also works with numpy >=1.22, which has a keyword
argument name change for np.quantile. [#12511]
* astropy.utils.iers.LeapSeconds.auto_open() no longer emits
unnecessary warnings when astropy.utils.iers.conf.auto_max_age
is set to None. [#12713]
* Tue Dec 28 2021 Ben Greiner <[email protected]>
- Skip flaky test_color_print3
* Tue Dec 28 2021 Ben Greiner <[email protected]>
- Update to version 5.0
* https://docs.astropy.org/en/stable/whatsnew/5.0.html
* Astropy 5.0 is a major release that adds significant new
functionality since the 4.3.x series of releases. In addition,
it is a long-term support release (LTS) which will be supported
with bug fixes for two years. In particular, this release
includes:
* Support for reading, writing, and converting Cosmology
* Cosmology units module
* New Models
* Added support for dask arrays in tables
* Added support for registering array-like objects as mixin
columns
* Support for reading and writing tables to Parquet format
* Support for reading and writing tables to MRT format
* Support for masked quantity columns, including masked FITS
columns with units
* Converting SkyCoord to QTable
* New Unified I/O architecture
* In addition to these major changes, Astropy v5.0 includes a
large number of smaller improvements and bug fixes, which
are described in the Full Changelog.
https://docs.astropy.org/en/stable/changelog.html#changelog
- Drop patches fixed upstream
* astropy-pr12006-cfitsio4.patch
* astropy-pr12159-py310.patch
* Mon Dec 27 2021 Ben Greiner <[email protected]>
- Add astropy-pr12159-py310.patch -- gh#astropy/astropy#12159
* Thu Oct 28 2021 Ben Greiner <[email protected]>
- Skip test_no_numpy_warnings[contours] due to wrong MPL version
check -- gh#astropy/astropy#12050
* Fri Aug 27 2021 Ben Greiner <[email protected]>
- Suppress hypothesis health check for slow OBS episodes
* Wed Aug 18 2021 Ben Greiner <[email protected]>
- Update to version 4.3.1
Bug Fixes
astropy.io.fits
* In fits.io.getdata do not fall back to first non-primary
extension when user explicitly specifies an extension. [#11860]
* Ensure multidimensional masked columns round-trip properly to
FITS. [#11911]
* Ensure masked times round-trip to FITS, even if
multi-dimensional. [#11913]
* Raise ValueError if an np.float32 NaN/Inf value is assigned to
a header keyword. [#11922]
astropy.modeling
* Fixed bug in fix_inputs handling of bounding boxes. [#11908]
astropy.table
* Fix an error when converting to pandas any Table subclass that
automatically adds a table index when the table is created. An
example is a binned TimeSeries table. [#12018]
astropy.units
* Ensure that unpickling quantities and units in new sessions
does not change hashes and thus cause problems with (de)
composition such as getting different answers from the .si
attribute. [#11879]
* Fixed cannot import name imperial from astropy.units
namespace. [#11977]
astropy.utils
* Ensure any .info on Masked instances is propagated correctly
when viewing or slicing. As a consequence, MaskedQuantity can
now be correctly written to, e.g., ECSV format with
serialize_method='data_mask'. [#11910]
* Thu Aug 05 2021 Ben Greiner <[email protected]>
- Add astropy-pr12006-cfitsio4.patch for cfitsio 4
gh#astropy/astropy#12006
- Revert the use of bundled cfitsio for non x86 architectures.
Those just had cfitsio earlier in the repositories than x86.
* Thu Aug 05 2021 Ben Greiner <[email protected]>
- Update to version 4.3.post1
Astropy 4.3 is a major release that adds significant new
functionality since the 4.2.x series of releases.
* Transformations to AltAz are now much more precise (and faster)
* Improvements in making Astropy thread-safe
* Performance improvements to sigma clipping
* Changes in the Time and IERS leap second handling
* Support for multidimensional and object columns in ECSV
* Support for reading and writing tables to QDP format
* Append table to existing FITS file
* General masked class for Quantity and other ndarray subclasses
* Configuration file improvements
* Support for different solvers and bracket option in z_at_value
* Full changelog:
https://docs.astropy.org/en/stable/changelog.html
- Drop patch and files merged upstream:
* astropy-pr11260+pr11549-wcs76.patch
* dss.14.29.56-62.41.05.fits.gz
* tab-time-last-axis.fits
- Use bundled cfitsio for s390x, Power and ARM
- Increase Hypothesis test deadline to 5s
* Sun Jul 04 2021 Ben Greiner <[email protected]>
- Replace astropy-pr11260-wcsfailures.patch with
astropy-pr11260+pr11549-wcs76.patch
* fixes test failures because of the recent Tumbleweed update to
wcslib 7.6
* include binary test file tab-time-last-axis.fits from
gh#astropy/astropy#11549, which does not fit into the patchfile
* Sat Apr 17 2021 Ben Greiner <[email protected]>
- Fix python_expand for test call
* Thu Apr 08 2021 Ben Greiner <[email protected]>
- Update to version 4.2.1
astropy.cosmology
* Fixed an issue where specializations of the comoving distance
calculation for certain cosmologies could not handle redshift
arrays. [#10980]
astropy.io.fits
* Fix bug where manual fixes to invalid header cards were not
preserved when saving a FITS file. [#11108]
astropy.io.votable
* NumericArray converter now properly broadcasts scalar mask to
array. [#11157]
astropy.table
* Fix bug when initializing a Table subclass that uses
TableAttribute's. If the data were an instance of the table
then attributes provided in the table initialization call
could be ignored. [#11217]
astropy.time
* Change epoch of TimeUnixTAI ("unix_tai") from
1970-01-01T00:00:00 UTC to 1970-01-01T00:00:00 TAI to match
the intended and documented behaviour. This essentially
changes the resulting times by 8.000082 seconds, the initial
offset between TAI and UTC. [#11249]
astropy.units
* Fixed a bug with the quantity_input decorator where allowing
dimensionless inputs for an argument inadvertently disabled
any checking of compatible units for that argument. [#11283]
astropy.utils
* Fix a bug so that np.shape, np.ndim and np.size again work on
classes that use ShapedLikeNDArray, like representations,
frames, sky coordinates, and times. [#11133]
astropy.wcs
* Fix error when a user defined proj_point parameter is passed
to fit_wcs_from_points. [#11139]
* Mon Mar 08 2021 Ben Greiner <[email protected]>
- Fix test failures with updated wcslib -- gh#astropy/astropy#11260
* Add astropy-pr11260-wcsfailures.patch
* Add dss.14.29.56-62.41.05.fits.gz
* Fri Jan 15 2021 Benjamin Greiner <[email protected]>
- Make sure that the python >= 3.7 requirement is checked on
build time and let rpm do the rest.
- Use bundled libraries on Leap 15.X
* Fri Jan 01 2021 Benjamin Greiner <[email protected]>
- Increase the hypothesis test deadline
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