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| Name: hdf5_1_12_3-gnu-openmpi5-hpc-module | Distribution: openSUSE:Factory:zSystems |
| Version: 1.12.3 | Vendor: openSUSE |
| Release: 1.2 | Build date: Mon May 13 13:41:05 2024 |
| Group: Development/Libraries/Parallel | Build host: reproducible |
| Size: 1781 | Source RPM: hdf5_1_12_3-gnu-openmpi5-hpc-1.12.3-1.2.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://www.hdfgroup.org/HDF5/ | |
| Summary: Module files for hdf5_1_12_3-gnu-openmpi5-hpc | |
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes. This package contains the environment module needed for the HDF5 library packages.
BSD-3-Clause
* Mon May 13 2024 Atri Bhattacharya <[email protected]>
- Update to version 1.12.3:
* Bumped the minimum required version of Autoconf to 2.71.
* Added new option to build libaec and zlib inline with CMake.
* Changed the error handling for a not found path in the find
plugin process.
* Removed "-commons" linking option to fix a compile error on
MacOS Sonoma that resulted in build failure.
* Doxygen User Guide documentation can be configured and
generated.
- Minor patch rebase for updated version:
* Disable-phdf5-tests.patch
* Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* H5O_fsinfo_decode-Make-more-resilient-to-out-of-bounds-read.patch
* Hot-fix-for-CVE-2020-10812.patch
* PPC64LE-Fix-long-double-handling.patch
* Report-error-if-dimensions-of-chunked-storage-in-data-layout-2.patch
* Validate-location-offset-of-the-accumulated-metadata-when-comparing.patch
* When-evicting-driver-info-block-NULL-the-corresponding-entry.patch
* hdf5-1.8.11-abort_unknown_host_config.patch
* hdf5-LD_LIBRARY_PATH.patch
* hdf5-Remove-timestamps-from-binaries.patch
* hdf5-wrappers.patch
- Drop upstreamed patches:
* Remove-duplicate-code.patch
* H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch
* H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch
* Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch
* Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch
* Compound-datatypes-may-not-have-members-of-size-0.patch
* H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch
* Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch
- New BuildRequires: hostname.
- Work around an sed hack in upstream configure file by dropping
"-Werror=return-type" from RPM %optflags.
* Wed Mar 20 2024 Atri Bhattacharya <[email protected]>
- Work around bot rejection for unapplied Patch7.
* Thu Feb 22 2024 Dominique Leuenberger <[email protected]>
- Use %patch -P N instead of deprecated %patchN.
* Fri Feb 02 2024 Atri Bhattacharya <[email protected]>
- Add openmpi5 and gnu-hpc-openmpi5 flavours.
* Mon Oct 23 2023 Nicolas Morey <[email protected]>
- Drop support for obsolete openmpi[123]
- Prepare support for openmpi5
* Mon Feb 13 2023 Egbert Eich <[email protected]>
- Fix CVE-2021-37501 - overflow in calculation of data buffer due to bogus
input file (bsc#1207973).
https://github.com/HDFGroup/hdf5/issues/2458
https://github.com/HDFGroup/hdf5/pull/2459
Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch
Remove-duplicate-code.patch
* Tue Nov 15 2022 Atri Bhattacharya <[email protected]>
- Add to specfile missing patch:
Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* Sat Oct 15 2022 Egbert Eich <[email protected]>
- Fix CVEs:
* CVE-2021-46244 (bsc#1195215)
Compound-datatypes-may-not-have-members-of-size-0.patch
* CVE-2018-13867 (bsc#1101906)
Validate-location-offset-of-the-accumulated-metadata-when-comparing.patch
* CVE-2018-16438 (bsc#1107069)
Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch
* CVE-2020-10812 (bsc#1167400)
Hot-fix-for-CVE-2020-10812.patch
* CVE-2021-45830 (bsc#1194375)
H5O_fsinfo_decode-Make-more-resilient-to-out-of-bounds-read.patch
* CVE-2019-8396 (bsc#1125882)
H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch
* CVE-2018-11205 (bsc#1093663)
Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch
* CVE-2021-46242 (bsc#1195212)
When-evicting-driver-info-block-NULL-the-corresponding-entry.patch
* CVE-2021-45833 (bsc#1194366)
Report-error-if-dimensions-of-chunked-storage-in-data-layout-2.patch
* CVE-2018-14031 (bsc#1101475)
H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch
* CVE-2018-17439 (bsc#1111598)
H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch
- Fix an error message:
Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* Wed Sep 21 2022 Stefan Brüns <[email protected]>
- Remove timestamp/buildhost/kernel version from libhdf5.settings (boo#1209548).
* Wed Jul 27 2022 Atri Bhattacharya <[email protected]>
- Update to version 1.12.2:
See <https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2-RELEASE.txt>.
- Minor re-base of existing patches to apply cleanly:
* hdf5-LD_LIBRARY_PATH.patch
* hdf5-1.8.11-abort_unknown_host_config.patch
* hdf5-Remove-timestamps-from-binaries.patch
* hdf5-mpi.patch
* Disable-phdf5-tests.patch
- Drop upstreamed patch:
hdf5-1.10.8-pr1494-fix-release-check-version.patch.
* Wed May 04 2022 Egbert Eich <[email protected]>
- Security Fix:
Add configure option --disable-hltools to disable GIF tools as
recommended in the 1.10.8 release:
CVE-2018-17433 (bsc#1109565),
CVE-2018-17436 (bsc#1109568),
CVE-2020-10809 (bsc#1167404).
* Thu Apr 07 2022 Christoph Junghans <[email protected]>
- add hdf5-wrappers.patch from Fedora, so strip flags from
wrappers and prefer shared linking
- add missing zlib-devel devel dep
* Thu Mar 31 2022 Ben Greiner <[email protected]>
- Add hdf5-1.10.8-pr1494-fix-release-check-version.patch
* boo#1179521, boo#1196682, gh#HDFGroup/hdf5#1494
* Avoids package crashes due to an overeager version check.
Packages depending on the shared libraries are not being
rebuilt in Factory after a patchlevel version bump of hdf5
without SONAME changes.
* Wed Feb 16 2022 Atri Bhattacharya <[email protected]>
- Update to version 1.10.8:
* Added new option to control the build of High-Level tools
* Adds C++ Autotools configuration file for Intel
* Adds C++ Autotools configuration file for PGI
* Updates PGI C options
* CMake will now run the shell script tests in test/ by default
* Removed unused HDF5_ENABLE_HSIZET option from CMake
* CMake no longer builds the C++ library by default
* Removal of pre-VS2015 work-arounds
* Add CMake variable HDF5_LIB_INFIX
* Added a configure-time option to control certain compiler
warnings
* CMake option to build the HDF filter plugins project as an
external project
* Added a configure-time option to consider certain compiler
warnings
* Autotools and CMake target added to produce doxygen generated
documentation
* CMake option to build the HDF filter plugins project as an
external project
* Added CMake option to format source files
* Change how the release part of version, in major.minor.release
is checked
* H5Gcreate1() now rejects size_hint parameters larger than
UINT32_MAX
* H5Pset_fapl_log() no longer crashes when passed an invalid
fapl ID
* Fixes a segfault when H5Pset_mdc_log_options() is called
multiple times
* File locking now works on Windows
* H5Epush_ret() now requires a trailing semicolon
* Improved performance of H5Sget_select_elem_pointlist
* H5Fget_name_f fixed to handle correctly trailing whitespaces
and newly allocated buffers.
* Added new H5S functions.
* Refactored the perform tools and removed dependencies on test
library.
* h5repack added help text for user-defined filters.
* Doxygen documentation is available when configured and
generated.
* Fixed CVE-2018-17432 (bsc#1109564)
* Fixed a segmentation fault
* Detection of simple data transform function "x"
* Fixed CVE-2020-10810 - an invalid read and memory leak when
parsing (bsc#1167401)
* Fixed CVE-2018-14460 (bsc#1102175)
* Fixed CVE-2018-11206 (bsc#1093657)
(same issue as CVE-2018-14032 (bsc#1101474))
* Fixed CVE-2018-14033 (bsc#1101471)
(same issue as CVE-2020-10811 (bsc#1167405))
* Remove underscores on header file guards
* H5FArray.java class:
- Convert the entire byte array into a 1-d array of the
desired type, rather than performing 1 conversion per row;
- Use the Java Arrays method copyOfRange to grab the section
of the array from (1) that is desired to be inserted into
the destination array.
* Corrected path searched by CMake find_package command
* Corrected pkg-config compile script
* Fixed CMake C++ compiler flags
* Autotools clang debug optimization level change
* Better support for libaec (open-source Szip library) in CMake
* Refactor CMake configure for Fortran
* Remove arbitrary warning flag groups from CMake builds
* Reclassify CMake messages, to allow new modes and --log-level
option
* Fixes Autotools determination of the stat struct having an
st_blocks field
* Changed how h5dump and h5ls identify long double.
* Fixed tools argument parsing.
* Updated doxygen comments with changes for release
- Minor rebase of patches to apply cleanly.
* Fri Jan 29 2021 Egbert Eich <[email protected]>
- Fix update_so_version.sh, write so versions to file being included.
/usr/share/lmod/moduledeps/gnu-14-openmpi-5/phdf5 /usr/share/lmod/moduledeps/gnu-14-openmpi-5/phdf5/.version.1.12.3 /usr/share/lmod/moduledeps/gnu-14-openmpi-5/phdf5/1.12.3
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