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Bowtie 2 is an ultra fast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
| Package | Summary | Distribution | Download |
| bowtie2-2.5.4-1.3.aarch64.html | Fast and memory-efficient short read aligner | OpenSuSE Ports Tumbleweed for aarch64 | bowtie2-2.5.4-1.3.aarch64.rpm |
| bowtie2-2.5.4-1.3.s390x.html | Fast and memory-efficient short read aligner | OpenSuSE Ports Tumbleweed for s390x | bowtie2-2.5.4-1.3.s390x.rpm |
| bowtie2-2.5.4-1.2.x86_64.html | Fast and memory-efficient short read aligner | OpenSuSE Tumbleweed for x86_64 | bowtie2-2.5.4-1.2.x86_64.rpm |
| bowtie2-2.5.4-1.1.ppc64le.html | Fast and memory-efficient short read aligner | OpenSuSE Ports Tumbleweed for ppc64le | bowtie2-2.5.4-1.1.ppc64le.rpm |
| bowtie2-2.5.4-lp160.1.5.aarch64.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 16.0 for aarch64 | bowtie2-2.5.4-lp160.1.5.aarch64.rpm |
| bowtie2-2.5.4-lp160.1.5.ppc64le.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 16.0 for ppc64le | bowtie2-2.5.4-lp160.1.5.ppc64le.rpm |
| bowtie2-2.5.4-lp160.1.5.s390x.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 16.0 for s390x | bowtie2-2.5.4-lp160.1.5.s390x.rpm |
| bowtie2-2.5.4-lp160.1.5.x86_64.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 16.0 for x86_64 | bowtie2-2.5.4-lp160.1.5.x86_64.rpm |
| bowtie2-2.5.1-6.fc42.aarch64.html | An ultra fast and memory-efficient read aligner | Fedora Rawhide for aarch64 | bowtie2-2.5.1-6.fc42.aarch64.rpm |
| bowtie2-2.5.1-6.fc42.ppc64le.html | An ultra fast and memory-efficient read aligner | Fedora Rawhide for ppc64le | bowtie2-2.5.1-6.fc42.ppc64le.rpm |
| bowtie2-2.5.1-6.fc42.x86_64.html | An ultra fast and memory-efficient read aligner | Fedora Rawhide for x86_64 | bowtie2-2.5.1-6.fc42.x86_64.rpm |
| bowtie2-2.5.1-5.fc41.aarch64.html | An ultra fast and memory-efficient read aligner | Fedora 41 for aarch64 | bowtie2-2.5.1-5.fc41.aarch64.rpm |
| bowtie2-2.5.1-5.fc41.ppc64le.html | An ultra fast and memory-efficient read aligner | Fedora 41 for ppc64le | bowtie2-2.5.1-5.fc41.ppc64le.rpm |
| bowtie2-2.5.1-5.fc41.x86_64.html | An ultra fast and memory-efficient read aligner | Fedora 41 for x86_64 | bowtie2-2.5.1-5.fc41.x86_64.rpm |
| bowtie2-2.5.1-4.fc40.aarch64.html | An ultra fast and memory-efficient read aligner | Fedora 40 for aarch64 | bowtie2-2.5.1-4.fc40.aarch64.rpm |
| bowtie2-2.5.1-4.fc40.ppc64le.html | An ultra fast and memory-efficient read aligner | Fedora 40 for ppc64le | bowtie2-2.5.1-4.fc40.ppc64le.rpm |
| bowtie2-2.5.1-4.fc40.x86_64.html | An ultra fast and memory-efficient read aligner | Fedora 40 for x86_64 | bowtie2-2.5.1-4.fc40.x86_64.rpm |
| bowtie2-2.5.1-2.fc39.aarch64.html | An ultra fast and memory-efficient read aligner | Fedora 39 for aarch64 | bowtie2-2.5.1-2.fc39.aarch64.rpm |
| bowtie2-2.5.1-2.fc39.ppc64le.html | An ultra fast and memory-efficient read aligner | Fedora 39 for ppc64le | bowtie2-2.5.1-2.fc39.ppc64le.rpm |
| bowtie2-2.5.1-2.fc39.x86_64.html | An ultra fast and memory-efficient read aligner | Fedora 39 for x86_64 | bowtie2-2.5.1-2.fc39.x86_64.rpm |
| bowtie2-2.5.1-bp156.2.24.aarch64.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 15.6 for aarch64 | bowtie2-2.5.1-bp156.2.24.aarch64.rpm |
| bowtie2-2.5.1-bp156.2.24.s390x.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 15.6 for s390x | bowtie2-2.5.1-bp156.2.24.s390x.rpm |
| bowtie2-2.5.1-bp156.2.24.x86_64.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 15.6 for x86_64 | bowtie2-2.5.1-bp156.2.24.x86_64.rpm |
| bowtie2-2.5.1-bp155.1.15.aarch64.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 15.5 for aarch64 | bowtie2-2.5.1-bp155.1.15.aarch64.rpm |
| bowtie2-2.5.1-bp155.1.15.s390x.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 15.5 for s390x | bowtie2-2.5.1-bp155.1.15.s390x.rpm |
| bowtie2-2.5.1-bp155.1.15.x86_64.html | Fast and memory-efficient short read aligner | OpenSuSE Leap 15.5 for x86_64 | bowtie2-2.5.1-bp155.1.15.x86_64.rpm |
| bowtie2-2.4.1-1.el8.aarch64.html | An ultra fast and memory-efficient read aligner | EPEL 8 for aarch64 | bowtie2-2.4.1-1.el8.aarch64.rpm |
| bowtie2-2.4.1-1.el8.ppc64le.html | An ultra fast and memory-efficient read aligner | EPEL 8 for ppc64le | bowtie2-2.4.1-1.el8.ppc64le.rpm |
| bowtie2-2.4.1-1.el8.x86_64.html | An ultra fast and memory-efficient read aligner | EPEL 8 for x86_64 | bowtie2-2.4.1-1.el8.x86_64.rpm |
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